Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g113 ATGTCGTCTGTATACGTATCAGAGCCGCCGACGAAGGGGAAAGTGATAGTGACGACGACGTACGGTCCTTTGGATATCGAGCTTTGGCCCAAAGAGGCTCCCAAAGCGGTTAGAAACTTCGTCCAGCTCTGCCTCGAAGGCTACTATGATAACACCATCTTTCACCGCATCATCAAAGGATTTCTAGTTCAAGGCGGCGACCCCACAGGCTCCGGCACCGGTGGGGAGAGTATCTATGGGAGTGCATTTGCTGATGAGTTCCATTCACGGCTAAGGTTCAACCATCGGGGCTTAGTTGCATGTGCAAATGCTGGCTCACCAAATTCGAATGGGAGTCAGTTCTTTATATCCTTGGATCGTTGTGATTGGCTTGATCGGAAGAATACCATTTTTGGAAAGGTAACTGGGGATTCATTGTATAATCTTCCAAGATTAGGTGATGTTGAAATTGATAAAAATGATCGACCAGTTGATCCACCCCCAAAGATTATCTCTGTTGAGGTATTATGGAATCCGTTTGATGATCTTGTTCCAAGAAAGACACTTGCAAAGTCTTTGCCCCATTCCACTAATGATATTGACAACAAAGATCTGAAAAAGAAAGCTGTAAAAAAGCTGAATTTGCTTTCATTTGGAGAAGAAGCTGAAGAAGAGGAGAAAGAATTGGAAGCTGTTAAGCAAAAGATAAAGAGTAGTCATGATGTACTAAATGATCCTCGTCTCCTCAAGGGGGAAATTCCAAGTAAAGAATTGAACCCTTCGGAAGTCAAAATAAACAAGGATTTGCAGTTATCTGTGAGGGAAGCTCTGAGCGCGAAGAAAGAAGAATCATGGAAAGAATCAGAATCTGAATTTTCTAACTTCCTTGACCATAGTGATGATGATGAGGCAAACTTTGATGCACGAATGCGTCAACAGATCCTAAGAAAAAGGAAGGAGCTTGATGATCTACCAACAAAGCAAAAGTTGAACAAAGGGAATAGCAACTTGAAGGACCACGAAACCTCTACTCCAAGGTCCAGTGCTGAAACCTTTGATGACCGGCCAAAAGTAGAAAAGCTGGCATTGAGGAAAAAGGGAATAGGCTCGGAAGCCAGAGCTGAACGCATGGCTAAAGCAGATGCAGACCTACAGCTTTTGGGTGAAGCTGAACAGCAAAGACAGTTGCAGAAACAGAAGAAGCGCAGACTACAAGGACGTGAAGATGAAGTGCTAGCAAAACTGCAGAGGTTTCAAAAGAAGATTTCTGCAAAACCTGTTGCCTCAGAAACCGAGTCTAGGGTTGAAGGTGATGAAGATGATGATATATATAGCTTGAGAGGAACTCAGCTAAAGTTTACACCAGAGCCTGGCAAGGACCGCATGTCACGTAGTGATGACCCAAATGACTATGTGGTGCATGACCCTCTTTTGGAGAAAGGGAAGGAGAAGTTCAACAAGATGCAAGCCAAGCAAAAACGACGGGAACGTGAATGGGCTGGCAAATCTCTTACATAA 1497 43.89 MSSVYVSEPPTKGKVIVTTTYGPLDIELWPKEAPKAVRNFVQLCLEGYYDNTIFHRIIKGFLVQGGDPTGSGTGGESIYGSAFADEFHSRLRFNHRGLVACANAGSPNSNGSQFFISLDRCDWLDRKNTIFGKVTGDSLYNLPRLGDVEIDKNDRPVDPPPKIISVEVLWNPFDDLVPRKTLAKSLPHSTNDIDNKDLKKKAVKKLNLLSFGEEAEEEEKELEAVKQKIKSSHDVLNDPRLLKGEIPSKELNPSEVKINKDLQLSVREALSAKKEESWKESESEFSNFLDHSDDDEANFDARMRQQILRKRKELDDLPTKQKLNKGNSNLKDHETSTPRSSAETFDDRPKVEKLALRKKGIGSEARAERMAKADADLQLLGEAEQQRQLQKQKKRRLQGREDEVLAKLQRFQKKISAKPVASETESRVEGDEDDDIYSLRGTQLKFTPEPGKDRMSRSDDPNDYVVHDPLLEKGKEKFNKMQAKQKRREREWAGKSLT* 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1119677 1128024 + Vvi4g113 Vvi4g113 784892

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g113 498 MobiDBLite consensus disorder prediction 450 498 - -
Vvi4g113 498 MobiDBLite consensus disorder prediction 310 351 - -
Vvi4g113 498 CDD cyclophilin_CeCYP16-like 8 180 - -
Vvi4g113 498 MobiDBLite consensus disorder prediction 413 498 - -
Vvi4g113 498 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 IPR020892 GO:0003755|GO:0006457
Vvi4g113 498 Coils Coil 380 414 - -
Vvi4g113 498 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 5 204 IPR044666 -
Vvi4g113 498 MobiDBLite consensus disorder prediction 336 351 - -
Vvi4g113 498 PANTHER SPLICEOSOME-ASSOCIATED PROTEIN CWC27 HOMOLOG 5 204 - -
Vvi4g113 498 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 159 IPR002130 GO:0000413|GO:0003755
Vvi4g113 498 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 168 IPR002130 GO:0000413|GO:0003755
Vvi4g113 498 SUPERFAMILY Cyclophilin-like 14 182 IPR029000 -
Vvi4g113 498 MobiDBLite consensus disorder prediction 321 335 - -
Vvi4g113 498 Coils Coil 208 235 - -
Vvi4g113 498 Gene3D - 2 183 IPR029000 -
Vvi4g113 498 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Vvi4g113 498 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Vvi4g113 498 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Vvi4g113 498 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Vvi4g113 498 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g113 K12737 SDCCAG10; peptidyl-prolyl cis-trans isomerase SDCCAG10 [EC:5.2.1.8] - vvi:100267905 933.324
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g113 Blo01g01459 . Bda01g00628 . . Bpe02g00496 . Bma01g02208 . . Cma01g01723 . . . . . . . . . . . . . Cla05g01847 Cam05g1971 Cec05g1984 Cco05g2043 Clacu05g1964 Cmu05g1845 Cre05g1969 Cone4ag1675 Cone7ag1278 . . Lsi04g01412 . . . . . . . . . . . . Cmo01g01789 . . . Car01g01337 . . Cpe02g00272 Bhi09g03131 . . . Hepe01g1898 Mch11g0430 . . . . . . . . . . . Cme07g00208
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010515 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32