Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1132 ATGGTGCTCGAGGCGACTATGATCTGTATCGACAATTCCGAATGGATGCGAAATGGCGATTATTCTCCCACTAGATTTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTGGAGCTAAGACTCAGTCCAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGCAAAGGGGTCCGAGTTTTGGTCACTCCCACAAGCGATCTCGGCAAGATCTTGGCGTGCATGCACGGTTTAGAGGTGGGTGGTGAGATGAACTTAGCCGCAGGTATCCAAGTGGCTCAATTGGCTCTTAAGCATCGACAAAACAAAAAGCAGCAACAAAGGATCATTGTCTTTGCTGGAAGTCCTGTAAAGTATGACAAGAAGGTATTAGAGATGATTGGAAGAAAGCTAAAAAAGAATAGTGTGGCCATTGATATTGTGGATTTTGGTGAGGATGATGATGGGAAGCCAGAGAAACTTGAGGCCCTTCTTGGTTCTGTAAACAACAATGATAGTAGCCACATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAGTACACCCATCTTCACAGGGGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGCTGCCGCCGCAGCAGCAGCTGGTGGTGTGGCTGGTTTTGATTTTGGTGTGGATCCAAACTTAGATCCTGAACTGGCTCTTGCTCTTAGAGTTTCAATGGAAGAAGAGAGAGCGAGACAAGAAGCTGCTGCTAAAAAGGCTGCGGAGGAGGCTTCCAGACAGGAAAAGGAAGGGGAACAGCAATCTAGTTCTCAAGATGCAACTATGACTGAGCACGCCAATGTTGCAGCTTCTGATGCTGATAAGAAAAGTGATCTAATGGATGATGAGAATGCTTTGCTACAGCAGGCCCTTGCAATGTCTATGGATGACCCTGCCACTAGCCTTGCCATGAGAGACACAGATATGTCTGAGGCAGCTGCAGATGATCAGGACTTGGCTCTTGCTCTTCAATTATCTGTGCAGGACACTGGAAAAGATTCAACCAGTCAGACCGACATGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCTCTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAGTCCCAGCAGAAGAAGAATGAGGACAAGGCACCAGATGAGGAAGACAAGTGA 1215 46.58 MVLEATMICIDNSEWMRNGDYSPTRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEVGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSPVKYDKKVLEMIGRKLKKNSVAIDIVDFGEDDDGKPEKLEALLGSVNNNDSSHIVHVPAGPNALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVAGFDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEEASRQEKEGEQQSSSQDATMTEHANVAASDADKKSDLMDDENALLQQALAMSMDDPATSLAMRDTDMSEAAADDQDLALALQLSVQDTGKDSTSQTDMSKLLTDQTFVSSILASLPGVDPNDPSVKDLLASMQNESESQQKKNEDKAPDEEDK* 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20147676 20163066 + Vvi4g1132 Vvi4g1132 785911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1132 404 Pfam Ubiquitin interaction motif 324 338 IPR003903 -
Vvi4g1132 404 Pfam Ubiquitin interaction motif 291 306 IPR003903 -
Vvi4g1132 404 Pfam Ubiquitin interaction motif 224 237 IPR003903 -
Vvi4g1132 404 Pfam von Willebrand factor type A domain 6 115 IPR002035 -
Vvi4g1132 404 Gene3D - 220 337 - -
Vvi4g1132 404 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 291 310 IPR003903 -
Vvi4g1132 404 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 323 342 IPR003903 -
Vvi4g1132 404 SMART VWA_4 2 175 IPR002035 -
Vvi4g1132 404 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 404 - -
Vvi4g1132 404 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 1 404 - -
Vvi4g1132 404 MobiDBLite consensus disorder prediction 242 287 - -
Vvi4g1132 404 MobiDBLite consensus disorder prediction 365 404 - -
Vvi4g1132 404 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 222 241 IPR003903 -
Vvi4g1132 404 SMART uim 291 310 IPR003903 -
Vvi4g1132 404 SMART uim 222 241 IPR003903 -
Vvi4g1132 404 SMART uim 323 342 IPR003903 -
Vvi4g1132 404 MobiDBLite consensus disorder prediction 242 262 - -
Vvi4g1132 404 MobiDBLite consensus disorder prediction 389 404 - -
Vvi4g1132 404 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
Vvi4g1132 404 CDD VWA_26S_proteasome_subunit 1 188 - -
Vvi4g1132 404 Coils Coil 232 259 - -
Vvi4g1132 404 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
Vvi4g1132 404 SUPERFAMILY vWA-like 4 174 IPR036465 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1132 K03029 PSMD4, RPN10; 26S proteasome regulatory subunit N10 - vvi:100257366 722.235
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1132 . . . . Bpe15g00476 Bpe13g00410 . . . . . Cma07g00417 Car03g00623 Car07g00367 Sed14g1201 Cpe19g00866 Cpe10g00673 Bhi03g00846 Tan03g2094 Cmetu04g2423 . Hepe04g1603 . . . . . . . . . Cone8ag0856 . Cone6ag1691 Cone9ag1613 Lsi01g00589 . . Cme08g00943 . . . . . . Bma03g00956 Bma06g00092 . Cmo03g00701 Cmo07g00415 . . . . . . . . . . . . . . . . . . . . Lsi07g01096 Csa06g03341 Chy02g00560 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002659 1 1 0 2 2 1 4 1 2 2 2 1 3 2 2 4 1 3 4 1 2 1 2 2 2 2 2 2 2 2 58