Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1133 ATGGCGTTGAAGTTTTTGAACAAGAAGGGATGGCACACGGGGAGTCTTCGGAACATAGAGAACGTGTGGAAGGCTGAGCAGAAGCATGACGCTGAGCAGAAGAAATTGGAAGAGCTCCGCAAACAGATTCTGGAGGAGAGGGAGCGCTCAGAATATCGGCTCCTCCAGGAACAAGCTGGCCTCGTTCCCAAGCAAGAGAGATTGGAATTTCTTTATGATTCTGGATTAGCAGTAGGAAAGGGCAGCTCTGATGGATTCAAAGCACTGGAAGCCCTGCCCAGCAACGATGTAGCCTCCTCTTCTTCTGCCAAGCAGCAACCATCCGTGCCAGGAGCTTTATTTGAGGAGAAACCTCAATCTGCCAATGATACATGGAGGAAACTTCATTCTGATCCTTTGCTTATGATTCGACAGCGAGAACAAGAAGCCCTGGCACACATTAAGAACAATCCAGTTCAGATGGCCATGATCCGCAAATCTGTGGAAGAGAAAAAGCCCAAGGAGAAGAAACACGATAGAAAAGAGGAAAAGAAACTTCATCACAAGAGTTCAAAGCATCACACGCATTCTTCATCGAGACACCAATCTGAAAATGTCACTCCTGAAGAAGAAAGAAGAAAGGATGGTAGCCATAAGAGGTCAAATTATGAGGAAAAAGCACCAACAGATTCAGAAGATGAATCAGGTGAAAGGGGAAGATTAAAAAGGAAGAAACACCACAAGGAACTGAATCACAAGGAGAGGTCAAATTATGATAAAACACAGCAAGATTTGGACAATGAATCAGGTGACAGGGAGAGACCAAGAGACAAGAGACACCACAAGGACCTGAAGCACAAGGAGAGGTCAAATTATGATAAAACGCAGCAAGATTTGGATGATGAATCAGGTGACAGGGAGAGACCAAGAGACAAGAGACACCACAAGGACCTGAAGCACAAGGAGAGACCAAGAGACAAGAGACAGCACCAGGACCTGAAGCACAAGGAGAGGTCAAATTATGATAAAACACAGCAAGACTTGGACAATGAATCAGGTGACAGGGAGAGACCAAGAGACAAGAGACAGCACCAGGACCTCAAGCACAAGGAGAGGTCAAATTATGATAAAACACAGCAGGATTTGGATGATGAATCAGGTGACAGGGAGAAACCAAGAGACAAGAGACACCACAAGGACCTGAAATACAAAGAGCAAACATCCAGTGGCCTGTCTGACCTGAAATCTGGAGAAAATGACAATCTGGAAAGAATCAAGAATAGGGAGAAGTCGAAGCATGATAAATATTCTTCAGGAGAAAGGAAAAATAATGTTGCTTCTAGGGAGGAGACAGGGAGCAAAAAATTTTCTCAAGCAAGTCATTCTGATTCTCCTGCTAATCGCCATGAATCACACTATAGGCGCCGAAACACTGCTCCAAAACTTTCTGAAGAAGAGAGAGCTGCGAGGTTGCGAGAGATGCAAATGGATGTTGAGCTGCATGAAGAGCAGAGACGGAAACGCCTGAGGAAGGCTGAGGAAAATGATGCACAAGAGGCTACTCAAGCAGGCATATCCCAGGGAAGGGATTTCTTAGATGCTACTCACAAGAGTGTGTATGGTGCTGAGAAGGGAGGAAGCTCGACAATAGAGGAAAGCGTTCGTCGCCGCACACATTATTTGCAGGGCAGGTCAGAAGTGGGAGAAGGCAATGCATTCCGGCGGTGA 1707 45.81 MALKFLNKKGWHTGSLRNIENVWKAEQKHDAEQKKLEELRKQILEERERSEYRLLQEQAGLVPKQERLEFLYDSGLAVGKGSSDGFKALEALPSNDVASSSSAKQQPSVPGALFEEKPQSANDTWRKLHSDPLLMIRQREQEALAHIKNNPVQMAMIRKSVEEKKPKEKKHDRKEEKKLHHKSSKHHTHSSSRHQSENVTPEEERRKDGSHKRSNYEEKAPTDSEDESGERGRLKRKKHHKELNHKERSNYDKTQQDLDNESGDRERPRDKRHHKDLKHKERSNYDKTQQDLDDESGDRERPRDKRHHKDLKHKERPRDKRQHQDLKHKERSNYDKTQQDLDNESGDRERPRDKRQHQDLKHKERSNYDKTQQDLDDESGDREKPRDKRHHKDLKYKEQTSSGLSDLKSGENDNLERIKNREKSKHDKYSSGERKNNVASREETGSKKFSQASHSDSPANRHESHYRRRNTAPKLSEEERAARLREMQMDVELHEEQRRKRLRKAEENDAQEATQAGISQGRDFLDATHKSVYGAEKGGSSTIEESVRRRTHYLQGRSEVGEGNAFRR* 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20165290 20169686 - Vvi4g1133 Vvi4g1133 785912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1133 568 MobiDBLite consensus disorder prediction 245 271 - -
Vvi4g1133 568 MobiDBLite consensus disorder prediction 443 457 - -
Vvi4g1133 568 MobiDBLite consensus disorder prediction 174 189 - -
Vvi4g1133 568 MobiDBLite consensus disorder prediction 158 173 - -
Vvi4g1133 568 MobiDBLite consensus disorder prediction 542 556 - -
Vvi4g1133 568 MobiDBLite consensus disorder prediction 157 568 - -
Vvi4g1133 568 MobiDBLite consensus disorder prediction 190 233 - -
Vvi4g1133 568 MobiDBLite consensus disorder prediction 317 399 - -
Vvi4g1133 568 PANTHER CELL CYCLE CONTROL PROTEIN CWF25 1 304 - -
Vvi4g1133 568 PANTHER CELL CYCLE CONTROL PROTEIN CWF25 312 568 - -
Vvi4g1133 568 Pfam Pre-mRNA splicing factor 64 151 IPR022209 -
Vvi4g1133 568 MobiDBLite consensus disorder prediction 410 442 - -
Vvi4g1133 568 MobiDBLite consensus disorder prediction 279 305 - -
Vvi4g1133 568 Coils Coil 22 49 - -
Vvi4g1133 568 MobiDBLite consensus disorder prediction 95 122 - -
Vvi4g1133 568 MobiDBLite consensus disorder prediction 458 510 - -
Vvi4g1133 568 Pfam N-terminal domain of CBF1 interacting co-repressor CIR 11 46 IPR019339 -
Vvi4g1133 568 SMART Cir_N_3 10 46 IPR019339 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1133 - - - vvi:100243706 957.977
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1133 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .