Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1138 ATGGGGTCACACCTGAGAAGGGTCTTCAACAGAATCTCTGGTTTTGTCAGTCCTTGGAGAAGAAACCAAGCTCCTCATGGTCGAAGAATTTTCCATAGGGAAGTCCAACAAGAAGAATTCCAGTATCCAAGTAACAGTTGTCTCTCATCCTACTACAGTGTCTTCGTTGCTCGCCTTGCTATCATGGTCATGCTAGCTATTTTAATTGGACTGCTAACAATCTTGACATGGCACTTCACAAGGATCTATACAACGAAATCCATAAACAGCTTAGCATACGGCCTTCGCTATGAACTTCTACAGCGTCCCATATTAAGAATGTGGAACATCTTGAATTCTACTGTTGAAATAACAACAGCCCAGGTTAAGCTGTCAGAGTATGTAATCAAACGGTATAGCAAACCCACTACTCAAGCACAACAAGTTGAGCTGTATGAAGTGATGAGGGATGTAACATGGGCACTATTTGCAAGCCGTAAAGCTCTCAATGCGATAACCATAAACTACAGGAACGGTTTTGTCCAGGCTTTTCATAGAGATCACAGGAGTAACAATACATTCTACATCTTCTCTGATCTTGTCAATTATTCAATCAGTGGGTCTTACAATTCCAATACACTGTCATCTCATCAAGGGTGGAATGATCAATCCATACACAGTAACATTTCAGCAATTTGGTATCATGTGCCACTAGATCCTGTATCTGGTGAGAGAATAGGAAAGCCAAAAGCAATCCCTCCAGATGATCAAATCAACATTGCAGGCCTATCACAAGTTCCCGATGGTGTAGCTTCCTGGCATGTAGCAGTTAGCAAGTATACAGATTCACCGTTACTTTCAGCAGCATTGCCAGTTTGGGATCCATCCAATCAAAGTATAGTGGCTGTTGTAGGTGTCACAACAGCACTCTATAGTGTCGGCCAGCTGATGAAAGAACTTGTGGAAGTTCACAGTGGGCACATTTATTTGACCTCTCAAGAGGGATATTTACTAGCTACTTCAACAAATGCTCCTTTGTTAACAAATTCATCAACTGGGCCGAAGCTTATGCTGGCTATCGATTCTGAGGATCGAGTCATACGCTTGGGAGCTGAGTGGCTCCAAAGAACCTATGGCTACAAATTTCCTCCAAGTCATGTGGTTCACGTGGAGAATGCCAAGCTTGGTCATGAGCATTATTATATTGACTCGTTTTTTCTAAATTTAAAGAGACTTCCCATGGTGGGGGTTATCATCATTCCAAGAAAATACATAATGGGGAAGGTCGAGGAGAGAGCCCTCAAAACATTGATCATACTAATATCTGCATCTCTGTGTATTTTAGTCATTGGATGTGTTTGCATTTTGATATTGACAAATGGAGTGTCAAAAGAAATGAAACTAAGAGCAGAGCTGATAAGCCATCTTGATGCAAGAAGGCGGGCTGAGGCATCAAGCAACTATAAAAGCCAGTTTTTAGCAAACATGAGTCATGAACTGAGAACACCTATGGCTGCAGTGATTGGGTTGCTGGACATTCTTATATGCGATGATTGTCTCACAAATGAACAATATGCAACAGTTACCCAGATTCGTAAATGCTCAACTGCTCTACTCCGACTTCTAAACAACATTTTGGACATCAGCAAGGTGGAATCTGGGAAACTGGTTCTGGAAGATGCTGAATTTGACTTGGGACGAGAACTTGAAGGACTCGTCGATATGTTCTCTGTGCAGTGCATTAACCACAATGTGGAGACTGTTCTAGATCTCTCAGATGATATGCCAAAGTTAGTTCGAGGAGACTCTGCTAGAGTTGTTCAAATATTTGCAAATCTAATCAGCAATTCTATCAAGTTTACAACATCGGGTCACATTATTCTGCGAGGATGGTGTGAGAATTCAAATGCCTATGGTAACTCTGGGAAGTTTCCCCTCAATCAGAAGGCATCACGATCTGCACTTAAAGCAAAGTTCAAGCAACATCGGAACCATGCCAAGAGGGCTTGCAAGAAAAACAACAAGATGACTCTTTGGTTTGAAGTGGATGACACTGGCTGTGGAATTGATCCAAGCAAATGGGAGTCAGTATTTGAAAGCTTTGAGCAGGCTGACCCCTCAACAACTCGAACTCATGGTGGCACCGGTCTTGGCCTATGCATTGTACGAACTTTGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTGAAGAAGAATAGTCCAGGGACTATAATGCAACTCTACTTGCTTCTCAATACACCTATAGAGGGAGCAGGACAGCATTGTCAACTAGAATTTGGGGAGCATAGCCTAGTAGTACTGCTTGCACTAAGTGGTAGTATGGGTAGGTTGATTATGTCCCAGTGGTTACGGAAGAATGGTGTGTTCACTTGGGAAGCATCAGAATGGAATGAACTGACTCAAATTCTGGGGCAACTTTTTCGAGCCAGAAGTTCAGTTCCTAATGGTGGCCTTGTTATGCAATGTTTACCAAGTGAACCTTTGAAAACTGAAGCACCAAACATACAAGACACAAGGGCCTCAGTTTTTGTCATAATTGTTGACATAGGGCTACTGGACTGGAGCACAGATATATGGAGGGAACAGCTTAACTTCCTTGACAAATACCATGGAAAAGCAAGGTTTGCATGGATACTAAACCATGATACTTCCAATTTCATAAAGATGGAGCTCCGCAGGAAAGGGCATTTATTAATGGTTAATAAACCATTATACAAGTCAAAAGTGGTGCATATTTTGGAAGCTGTCATAAAGGGGAGGGATCTTGAAATGCAAGGGAGAATTTTGAATGGTTTGAAAAGTACAAGAATAGAAGGTAATTTGCATGAATCTCTTGAAATTGATTCTACCCATTTTGAGGAGGTTCCCAGCTCTGATGATTCTGATAGGTCTGAAATGGGTATTGAATTTACTCAAAGCACATCCCCTTTAACAGAAGCTGAATGTGAAAATTGTAGAGGCCAAGAACAACATTTGATCAGCACTTGTCCGAAAGAGCATGGTAATTCTTATTCAGGAAAGACTGTGAATGGACAGAAATCTCTAGAAGGCTTACGAATACTGCTTGCTGAAGATACACCAGTTCTCCAGAGAGTTGCAACCATAATGCTTGAAAAAATGGGAGCAACAGTCATAGCTGTAGGAGATGGACTGCAGGCAGTAGATGCTTTGAAATGTATGCCTGGTGCAGAGGAGAGTAGAGGGAAATGTCTTTTGCAAGATGGCAGAACAAGGTGTCAAACACAAATCCATGATTCCCTGCCATATGACTTGATCCTAATGGATTGTCAAATGCCCAAGATGGATGGTTATGAAGCAACAAAAACAATAAGAAAGTCAGAAGAGGGAACAAGTTTGCACATTCCCATTGTTGCACTGACAGCCCATGCAATGTCATCAGATGAAGCCAAATGTTTGGAGGTTGGTATGGATGCTTATCTTACAAAGCCAATTGACTACAGGCTGATGGTGTCTACCATTCTTTCACTTACAAAAAGAATGGCCTAA 3507 41.75 MGSHLRRVFNRISGFVSPWRRNQAPHGRRIFHREVQQEEFQYPSNSCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTRIYTTKSINSLAYGLRYELLQRPILRMWNILNSTVEITTAQVKLSEYVIKRYSKPTTQAQQVELYEVMRDVTWALFASRKALNAITINYRNGFVQAFHRDHRSNNTFYIFSDLVNYSISGSYNSNTLSSHQGWNDQSIHSNISAIWYHVPLDPVSGERIGKPKAIPPDDQINIAGLSQVPDGVASWHVAVSKYTDSPLLSAALPVWDPSNQSIVAVVGVTTALYSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPKLMLAIDSEDRVIRLGAEWLQRTYGYKFPPSHVVHVENAKLGHEHYYIDSFFLNLKRLPMVGVIIIPRKYIMGKVEERALKTLIILISASLCILVIGCVCILILTNGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILICDDCLTNEQYATVTQIRKCSTALLRLLNNILDISKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSARVVQIFANLISNSIKFTTSGHIILRGWCENSNAYGNSGKFPLNQKASRSALKAKFKQHRNHAKRACKKNNKMTLWFEVDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNSPGTIMQLYLLLNTPIEGAGQHCQLEFGEHSLVVLLALSGSMGRLIMSQWLRKNGVFTWEASEWNELTQILGQLFRARSSVPNGGLVMQCLPSEPLKTEAPNIQDTRASVFVIIVDIGLLDWSTDIWREQLNFLDKYHGKARFAWILNHDTSNFIKMELRRKGHLLMVNKPLYKSKVVHILEAVIKGRDLEMQGRILNGLKSTRIEGNLHESLEIDSTHFEEVPSSDDSDRSEMGIEFTQSTSPLTEAECENCRGQEQHLISTCPKEHGNSYSGKTVNGQKSLEGLRILLAEDTPVLQRVATIMLEKMGATVIAVGDGLQAVDALKCMPGAEESRGKCLLQDGRTRCQTQIHDSLPYDLILMDCQMPKMDGYEATKTIRKSEEGTSLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYRLMVSTILSLTKRMA* 1169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20226271 20236797 + Vvi4g1138 Vvi4g1138 785917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1138 1168 PANTHER OSMOSENSOR HISTIDINE KINASE 2 976 - -
Vvi4g1138 1168 PANTHER OSMOSENSOR HISTIDINE KINASE 993 1165 - -
Vvi4g1138 1168 Gene3D - 998 1165 - -
Vvi4g1138 1168 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 594 744 IPR003594 -
Vvi4g1138 1168 Gene3D - 549 746 IPR036890 -
Vvi4g1138 1168 CDD REC_hyHK_CKI1_RcsC-like 1020 1160 - -
Vvi4g1138 1168 SMART HKATPase_4 594 746 IPR003594 -
Vvi4g1138 1168 Pfam Response regulator receiver domain 1020 1158 IPR001789 GO:0000160
Vvi4g1138 1168 PANTHER TWO-COMPONENT HISTIDINE KINASE 993 1165 - -
Vvi4g1138 1168 PANTHER TWO-COMPONENT HISTIDINE KINASE 2 976 - -
Vvi4g1138 1168 PRINTS Bacterial sensor protein C-terminal signature 671 685 IPR004358 GO:0016310|GO:0016772
Vvi4g1138 1168 PRINTS Bacterial sensor protein C-terminal signature 689 699 IPR004358 GO:0016310|GO:0016772
Vvi4g1138 1168 PRINTS Bacterial sensor protein C-terminal signature 706 724 IPR004358 GO:0016310|GO:0016772
Vvi4g1138 1168 ProSiteProfiles Histidine kinase domain profile. 488 746 IPR005467 -
Vvi4g1138 1168 Pfam His Kinase A (phospho-acceptor) domain 482 547 IPR003661 GO:0000155|GO:0007165
Vvi4g1138 1168 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 536 742 IPR036890 -
Vvi4g1138 1168 CDD HisKA 482 543 IPR003661 GO:0000155|GO:0007165
Vvi4g1138 1168 SMART HisKA_10 481 547 IPR003661 GO:0000155|GO:0007165
Vvi4g1138 1168 SMART REC_2 1018 1160 IPR001789 GO:0000160
Vvi4g1138 1168 ProSiteProfiles Response regulatory domain profile. 1019 1164 IPR001789 GO:0000160
Vvi4g1138 1168 SUPERFAMILY CheY-like 1016 1165 IPR011006 -
Vvi4g1138 1168 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 469 548 IPR036097 GO:0000155|GO:0007165
Vvi4g1138 1168 Gene3D - 469 548 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14707 PF02518 HATPase_c 1.80E-23 CL0025 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1138 - - vri:117913039 2207.95