Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1138 ATGGGGTCACACCTGAGAAGGGTCTTCAACAGAATCTCTGGTTTTGTCAGTCCTTGGAGAAGAAACCAAGCTCCTCATGGTCGAAGAATTTTCCATAGGGAAGTCCAACAAGAAGAATTCCAGTATCCAAGTAACAGTTGTCTCTCATCCTACTACAGTGTCTTCGTTGCTCGCCTTGCTATCATGGTCATGCTAGCTATTTTAATTGGACTGCTAACAATCTTGACATGGCACTTCACAAGGATCTATACAACGAAATCCATAAACAGCTTAGCATACGGCCTTCGCTATGAACTTCTACAGCGTCCCATATTAAGAATGTGGAACATCTTGAATTCTACTGTTGAAATAACAACAGCCCAGGTTAAGCTGTCAGAGTATGTAATCAAACGGTATAGCAAACCCACTACTCAAGCACAACAAGTTGAGCTGTATGAAGTGATGAGGGATGTAACATGGGCACTATTTGCAAGCCGTAAAGCTCTCAATGCGATAACCATAAACTACAGGAACGGTTTTGTCCAGGCTTTTCATAGAGATCACAGGAGTAACAATACATTCTACATCTTCTCTGATCTTGTCAATTATTCAATCAGTGGGTCTTACAATTCCAATACACTGTCATCTCATCAAGGGTGGAATGATCAATCCATACACAGTAACATTTCAGCAATTTGGTATCATGTGCCACTAGATCCTGTATCTGGTGAGAGAATAGGAAAGCCAAAAGCAATCCCTCCAGATGATCAAATCAACATTGCAGGCCTATCACAAGTTCCCGATGGTGTAGCTTCCTGGCATGTAGCAGTTAGCAAGTATACAGATTCACCGTTACTTTCAGCAGCATTGCCAGTTTGGGATCCATCCAATCAAAGTATAGTGGCTGTTGTAGGTGTCACAACAGCACTCTATAGTGTCGGCCAGCTGATGAAAGAACTTGTGGAAGTTCACAGTGGGCACATTTATTTGACCTCTCAAGAGGGATATTTACTAGCTACTTCAACAAATGCTCCTTTGTTAACAAATTCATCAACTGGGCCGAAGCTTATGCTGGCTATCGATTCTGAGGATCGAGTCATACGCTTGGGAGCTGAGTGGCTCCAAAGAACCTATGGCTACAAATTTCCTCCAAGTCATGTGGTTCACGTGGAGAATGCCAAGCTTGGTCATGAGCATTATTATATTGACTCGTTTTTTCTAAATTTAAAGAGACTTCCCATGGTGGGGGTTATCATCATTCCAAGAAAATACATAATGGGGAAGGTCGAGGAGAGAGCCCTCAAAACATTGATCATACTAATATCTGCATCTCTGTGTATTTTAGTCATTGGATGTGTTTGCATTTTGATATTGACAAATGGAGTGTCAAAAGAAATGAAACTAAGAGCAGAGCTGATAAGCCATCTTGATGCAAGAAGGCGGGCTGAGGCATCAAGCAACTATAAAAGCCAGTTTTTAGCAAACATGAGTCATGAACTGAGAACACCTATGGCTGCAGTGATTGGGTTGCTGGACATTCTTATATGCGATGATTGTCTCACAAATGAACAATATGCAACAGTTACCCAGATTCGTAAATGCTCAACTGCTCTACTCCGACTTCTAAACAACATTTTGGACATCAGCAAGGTGGAATCTGGGAAACTGGTTCTGGAAGATGCTGAATTTGACTTGGGACGAGAACTTGAAGGACTCGTCGATATGTTCTCTGTGCAGTGCATTAACCACAATGTGGAGACTGTTCTAGATCTCTCAGATGATATGCCAAAGTTAGTTCGAGGAGACTCTGCTAGAGTTGTTCAAATATTTGCAAATCTAATCAGCAATTCTATCAAGTTTACAACATCGGGTCACATTATTCTGCGAGGATGGTGTGAGAATTCAAATGCCTATGGTAACTCTGGGAAGTTTCCCCTCAATCAGAAGGCATCACGATCTGCACTTAAAGCAAAGTTCAAGCAACATCGGAACCATGCCAAGAGGGCTTGCAAGAAAAACAACAAGATGACTCTTTGGTTTGAAGTGGATGACACTGGCTGTGGAATTGATCCAAGCAAATGGGAGTCAGTATTTGAAAGCTTTGAGCAGGCTGACCCCTCAACAACTCGAACTCATGGTGGCACCGGTCTTGGCCTATGCATTGTACGAACTTTGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTGAAGAAGAATAGTCCAGGGACTATAATGCAACTCTACTTGCTTCTCAATACACCTATAGAGGGAGCAGGACAGCATTGTCAACTAGAATTTGGGGAGCATAGCCTAGTAGTACTGCTTGCACTAAGTGGTAGTATGGGTAGGTTGATTATGTCCCAGTGGTTACGGAAGAATGGTGTGTTCACTTGGGAAGCATCAGAATGGAATGAACTGACTCAAATTCTGGGGCAACTTTTTCGAGCCAGAAGTTCAGTTCCTAATGGTGGCCTTGTTATGCAATGTTTACCAAGTGAACCTTTGAAAACTGAAGCACCAAACATACAAGACACAAGGGCCTCAGTTTTTGTCATAATTGTTGACATAGGGCTACTGGACTGGAGCACAGATATATGGAGGGAACAGCTTAACTTCCTTGACAAATACCATGGAAAAGCAAGGTTTGCATGGATACTAAACCATGATACTTCCAATTTCATAAAGATGGAGCTCCGCAGGAAAGGGCATTTATTAATGGTTAATAAACCATTATACAAGTCAAAAGTGGTGCATATTTTGGAAGCTGTCATAAAGGGGAGGGATCTTGAAATGCAAGGGAGAATTTTGAATGGTTTGAAAAGTACAAGAATAGAAGGTAATTTGCATGAATCTCTTGAAATTGATTCTACCCATTTTGAGGAGGTTCCCAGCTCTGATGATTCTGATAGGTCTGAAATGGGTATTGAATTTACTCAAAGCACATCCCCTTTAACAGAAGCTGAATGTGAAAATTGTAGAGGCCAAGAACAACATTTGATCAGCACTTGTCCGAAAGAGCATGGTAATTCTTATTCAGGAAAGACTGTGAATGGACAGAAATCTCTAGAAGGCTTACGAATACTGCTTGCTGAAGATACACCAGTTCTCCAGAGAGTTGCAACCATAATGCTTGAAAAAATGGGAGCAACAGTCATAGCTGTAGGAGATGGACTGCAGGCAGTAGATGCTTTGAAATGTATGCCTGGTGCAGAGGAGAGTAGAGGGAAATGTCTTTTGCAAGATGGCAGAACAAGGTGTCAAACACAAATCCATGATTCCCTGCCATATGACTTGATCCTAATGGATTGTCAAATGCCCAAGATGGATGGTTATGAAGCAACAAAAACAATAAGAAAGTCAGAAGAGGGAACAAGTTTGCACATTCCCATTGTTGCACTGACAGCCCATGCAATGTCATCAGATGAAGCCAAATGTTTGGAGGTTGGTATGGATGCTTATCTTACAAAGCCAATTGACTACAGGCTGATGGTGTCTACCATTCTTTCACTTACAAAAAGAATGGCCTAA 3507 41.75 MGSHLRRVFNRISGFVSPWRRNQAPHGRRIFHREVQQEEFQYPSNSCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTRIYTTKSINSLAYGLRYELLQRPILRMWNILNSTVEITTAQVKLSEYVIKRYSKPTTQAQQVELYEVMRDVTWALFASRKALNAITINYRNGFVQAFHRDHRSNNTFYIFSDLVNYSISGSYNSNTLSSHQGWNDQSIHSNISAIWYHVPLDPVSGERIGKPKAIPPDDQINIAGLSQVPDGVASWHVAVSKYTDSPLLSAALPVWDPSNQSIVAVVGVTTALYSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPKLMLAIDSEDRVIRLGAEWLQRTYGYKFPPSHVVHVENAKLGHEHYYIDSFFLNLKRLPMVGVIIIPRKYIMGKVEERALKTLIILISASLCILVIGCVCILILTNGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILICDDCLTNEQYATVTQIRKCSTALLRLLNNILDISKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSARVVQIFANLISNSIKFTTSGHIILRGWCENSNAYGNSGKFPLNQKASRSALKAKFKQHRNHAKRACKKNNKMTLWFEVDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNSPGTIMQLYLLLNTPIEGAGQHCQLEFGEHSLVVLLALSGSMGRLIMSQWLRKNGVFTWEASEWNELTQILGQLFRARSSVPNGGLVMQCLPSEPLKTEAPNIQDTRASVFVIIVDIGLLDWSTDIWREQLNFLDKYHGKARFAWILNHDTSNFIKMELRRKGHLLMVNKPLYKSKVVHILEAVIKGRDLEMQGRILNGLKSTRIEGNLHESLEIDSTHFEEVPSSDDSDRSEMGIEFTQSTSPLTEAECENCRGQEQHLISTCPKEHGNSYSGKTVNGQKSLEGLRILLAEDTPVLQRVATIMLEKMGATVIAVGDGLQAVDALKCMPGAEESRGKCLLQDGRTRCQTQIHDSLPYDLILMDCQMPKMDGYEATKTIRKSEEGTSLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYRLMVSTILSLTKRMA* 1169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20226271 20236797 + Vvi4g1138 Vvi4g1138 785917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1138 1168 PANTHER OSMOSENSOR HISTIDINE KINASE 2 976 - -
Vvi4g1138 1168 PANTHER OSMOSENSOR HISTIDINE KINASE 993 1165 - -
Vvi4g1138 1168 Gene3D - 998 1165 - -
Vvi4g1138 1168 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 594 744 IPR003594 -
Vvi4g1138 1168 Gene3D - 549 746 IPR036890 -
Vvi4g1138 1168 CDD REC_hyHK_CKI1_RcsC-like 1020 1160 - -
Vvi4g1138 1168 SMART HKATPase_4 594 746 IPR003594 -
Vvi4g1138 1168 Pfam Response regulator receiver domain 1020 1158 IPR001789 GO:0000160
Vvi4g1138 1168 PANTHER TWO-COMPONENT HISTIDINE KINASE 993 1165 - -
Vvi4g1138 1168 PANTHER TWO-COMPONENT HISTIDINE KINASE 2 976 - -
Vvi4g1138 1168 PRINTS Bacterial sensor protein C-terminal signature 671 685 IPR004358 GO:0016310|GO:0016772
Vvi4g1138 1168 PRINTS Bacterial sensor protein C-terminal signature 689 699 IPR004358 GO:0016310|GO:0016772
Vvi4g1138 1168 PRINTS Bacterial sensor protein C-terminal signature 706 724 IPR004358 GO:0016310|GO:0016772
Vvi4g1138 1168 ProSiteProfiles Histidine kinase domain profile. 488 746 IPR005467 -
Vvi4g1138 1168 Pfam His Kinase A (phospho-acceptor) domain 482 547 IPR003661 GO:0000155|GO:0007165
Vvi4g1138 1168 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 536 742 IPR036890 -
Vvi4g1138 1168 CDD HisKA 482 543 IPR003661 GO:0000155|GO:0007165
Vvi4g1138 1168 SMART HisKA_10 481 547 IPR003661 GO:0000155|GO:0007165
Vvi4g1138 1168 SMART REC_2 1018 1160 IPR001789 GO:0000160
Vvi4g1138 1168 ProSiteProfiles Response regulatory domain profile. 1019 1164 IPR001789 GO:0000160
Vvi4g1138 1168 SUPERFAMILY CheY-like 1016 1165 IPR011006 -
Vvi4g1138 1168 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 469 548 IPR036097 GO:0000155|GO:0007165
Vvi4g1138 1168 Gene3D - 469 548 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1138 - - - vri:117913039 2207.95
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1138 Blo04g00878 Blo16g00087 . . Bpe15g00478 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0858 Cone12ag0821 . . . . . . . . . . . . Bma03g00954 . . . . Cma16g01243 . . . . . . . . . . . . . . . . . . . Lsi07g01094 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi4g1138 . 5 1168 Histidine Kinase Gene Family AT2G17820 67.1 0.0e+00 1484.2
Vvi1g534 . 1 839 Histidine Kinase Gene Family AT2G01830 70.4 0.0e+00 1194.1
Vvi1g1264 . 87 1035 Histidine Kinase Gene Family AT2G01830 54.9 4.3e-282 968.0
Vvi12g685 . 287 1201 Histidine Kinase Gene Family AT2G01830 53.8 3.3e-274 941.8
Vvi4g656 . 1 802 Histidine Kinase Gene Family AT5G10720 56.3 1.4e-273 939.5
Vvi14g7 . 1 1120 Histidine Kinase Gene Family AT1G09570 81.7 0.0e+00 1856.3
Vvi10g343 . 1 862 Histidine Kinase Gene Family AT1G09570 52.1 4.3e-256 881.7
Vvi5g63 . 13 922 Histidine Kinase Gene Family AT2G18790 67.2 0.0e+00 1356.3
Vvi14g7 . 7 1054 Histidine Kinase Gene Family AT2G18790 52.5 0.0e+00 1100.1
Vvi10g343 . 1 810 Histidine Kinase Gene Family AT2G18790 63.2 1.1e-304 1043.1
Vvi14g7 . 9 1114 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1149.0
Vvi12g703 . 10 913 Histidine Kinase Gene Family AT5G35840 53.7 0.0e+00 1117.4
Vvi5g63 . 6 974 Histidine Kinase Gene Family AT4G16250 64.3 0.0e+00 1377.1
Vvi14g7 . 14 1115 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1148.7
Vvi10g343 . 1 862 Histidine Kinase Gene Family AT4G16250 61.3 0.0e+00 1079.7
Vvi10g343 . 1 863 Histidine Kinase Gene Family AT4G18130 66.6 0.0e+00 1158.3
Vvi5g63 . 46 979 Histidine Kinase Gene Family AT4G18130 52.2 4.3e-301 1031.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005785 2 0 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14707 PF02518 HATPase_c 1.80E-23 CL0025 Vvi TR