Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1142 ATGTGGAATGTTCCCCCTGGTTTCAGGCCCAGCACATCTGCGCCTTCGTCTCCCGCAAAGCCAATTGGGGTGTCAAGAACTCGCTCAGACTCCTTTCATGTCACCCACAAAGTCCCTGTTGGCGACACTCCTTATGTGAGAGCCAAAAAGGTTCAGTTGGTTGACAAGGACCCGGAAAAGGCAATTCCGCTATTTTGGTCCGCCATTAATGCTGGAGATCGAGTGGATAGTGCGCTCAAGGACATGGCCATTGTGATGAAGCAACAGAACAGGGCTGAAGAAGCCATTGAGGCTATTAAATCGCTGCGAAGTCGTTGTTCAGATCAAGCCCAAGAGTCTCTTGATAATATCCTTCTGGATCTGTACAAGAGATGCGGGAGATTGGATGATCAAATTGCACTTTTGAGGCACAAATTGTTCTTGATTCAACAAGGGATGGCTTTCAATGGGAAGCGCACCAAGACTGCCAGATCCCAAGGGAAAAAATTTCAGGTGTCCGTGGGACAAGAAGCGACTCGGTTACTGGGGAACTTAGGATGGGCATTGATGCAGCAGAACAACTATATCGAAGCAGAAGATGCCTACAGGCGGGCACTTTCCATGGCTCCAGATAATAACAAGATGTGCAATCTGGGTATCTGCTTGATGAAGCAAGGGAGGATTCTGGAAGCCAAAGAAACCCTTAGAAGAGTGAAACCGGCTGTTGCAGATGGCCCGAGAGGTGTAGATTCCCACCTCAAAGCATTTGAGAGGGCACGGCAGATGCTGCTTGACCTTGAGTCTGAAATGTTGAATAAGGGAAGCGACCCTGTCGAGCAGAGTCGGCTCTTTGATGCCTTCCTCAGTTCTTCAGCGCTCTGGCAGCCTCAGCCTTGTAAGGACCAGCACACAACGAATACAATCAAATCTCAAGATGATTTTGGGGATGAGAACTTCGACACCAACAGAGTCATGAAGGTTCTTTCTGGACAGAAGATTGCCAAACCAACGGCTGTTCATGCGAACTCACTCAACGTCGCGGCATTGCCATTCTACTCATCAAAGACGACCAAGGACCCAATTGGAAAACCACTGCAGGAGTCCCTTAAGAGAACAAGATCAGGGCATGGTGCTAATTCGATAGGAGTGAATGAAACGGGGGCGTTCAGAAAGCCCTTAATGGAATCCATGGAACCAGAAAATAAGACTAGAAGGCGATCTCTTTCACCCGAAGAAAATGGGGACAAGTGGGCAGACTTTCTGCCAGACAGCAAGGAGTTTGAAGCGGCTCTTATTGCTGCAGTTCTGGGTTCAGCCACTGAAACAGGGAAGAAGACTAAAATGAGGATCTTGCCTTGTTCTATATTGTGA 1350 48.37 MWNVPPGFRPSTSAPSSPAKPIGVSRTRSDSFHVTHKVPVGDTPYVRAKKVQLVDKDPEKAIPLFWSAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLRHKLFLIQQGMAFNGKRTKTARSQGKKFQVSVGQEATRLLGNLGWALMQQNNYIEAEDAYRRALSMAPDNNKMCNLGICLMKQGRILEAKETLRRVKPAVADGPRGVDSHLKAFERARQMLLDLESEMLNKGSDPVEQSRLFDAFLSSSALWQPQPCKDQHTTNTIKSQDDFGDENFDTNRVMKVLSGQKIAKPTAVHANSLNVAALPFYSSKTTKDPIGKPLQESLKRTRSGHGANSIGVNETGAFRKPLMESMEPENKTRRRSLSPEENGDKWADFLPDSKEFEAALIAAVLGSATETGKKTKMRILPCSIL* 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20260683 20262824 + Vvi4g1142 Vvi4g1142 785921

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1142 449 PANTHER PROTEIN POLLENLESS 3-LIKE 2 1 441 IPR044961 -
Vvi4g1142 449 MobiDBLite consensus disorder prediction 1 30 - -
Vvi4g1142 449 SUPERFAMILY TPR-like 56 230 IPR011990 GO:0005515
Vvi4g1142 449 SMART tpr_5 172 205 IPR019734 GO:0005515
Vvi4g1142 449 MobiDBLite consensus disorder prediction 289 305 - -
Vvi4g1142 449 MobiDBLite consensus disorder prediction 9 24 - -
Vvi4g1142 449 Gene3D Tetratricopeptide repeat domain 50 266 IPR011990 GO:0005515
Vvi4g1142 449 PANTHER PROTEIN POLLENLESS 3-LIKE 2 1 441 - -
Vvi4g1142 449 ProSiteProfiles TPR repeat profile. 172 205 IPR019734 GO:0005515
Vvi4g1142 449 MobiDBLite consensus disorder prediction 362 412 - -
Vvi4g1142 449 MobiDBLite consensus disorder prediction 289 308 - -
Vvi4g1142 449 Pfam Tetratricopeptide repeat 174 205 IPR001440 GO:0005515
Vvi4g1142 449 MobiDBLite consensus disorder prediction 388 412 - -
Vvi4g1142 449 Coils Coil 85 112 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1142 - - - vvi:100257355 864.374
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1142 . . . Bda10g00191 . . . . . . . Cma07g00415 . Car07g00364 Sed14g1204 . Cpe10g00675 Bhi03g00842 Tan03g2099 Cmetu04g2642 . Hepe04g1607 . . . . . . . . . . . . Cone9ag1616 . . . Cme08g00947 . . . . Bpe10g00163 . . . . . Cmo07g00412 . . . . . . . . . . . . . . . . . . . . . Csa06g03345 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006467 2 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 38