Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1143 ATGGTGGTGGTAGAGATTGGTCTCGGCGGTGGCAAACTGAAGGAGAGCAGAGCCACTCCCATGGAAGCCCAAGCCTCAACCTTAGCCTCTACACCAGCACCAACTCCAGCACCACTAGTTGTAAATGTAGAATACTACAAAGAAATCGAAAGGGCTCATAGATATCTCTGTGCTTTCATTTCCAACAAAAAATGTGCACCCATGATGCTCCTGTTTCATGATGCAGGCACTTATGATGCTCTCACAAAGACAGGGGGCCCAAATGGCTCCATTAGAAACCCACAAGAGCTTAATCATTCTGCAAATAGGGGTTTGAAAACGGCAGTTGATCTTTGTGAGGAGGTGAAAAGGAGGCATCATTGCATTACATATGCTGACCTTTACCAGCTTGCTGGTGTTGTTGTAGTTGAGATTATTGGAGGCCCCACTATTTATGCTCTCTGGCCTTGTTTATGGAAAAGAAGTGCTGAACATTTAAGGTCAGTCTTTAACCGGATGGGTCTTGAGGACAAGGATATTGTGGCCCTCTCCGGAGCTCATACATTGGGAGGGGCACGTAAGCAAGTTCCAGGCTTTGATGGCAAGTGGACAGAGGAGCCCTGGAAGTTCGACAATTCGTATTTCAAGCGAGGATTCAACAGGGAGGCAGGCGATTGTTTATATTTTCCACAGACCAAGCATTAA 684 46.49 MVVVEIGLGGGKLKESRATPMEAQASTLASTPAPTPAPLVVNVEYYKEIERAHRYLCAFISNKKCAPMMLLFHDAGTYDALTKTGGPNGSIRNPQELNHSANRGLKTAVDLCEEVKRRHHCITYADLYQLAGVVVVEIIGGPTIYALWPCLWKRSAEHLRSVFNRMGLEDKDIVALSGAHTLGGARKQVPGFDGKWTEEPWKFDNSYFKRGFNREAGDCLYFPQTKH* 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20263132 20278688 - Vvi4g1143 Vvi4g1143 785922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1143 227 PRINTS Plant ascorbate peroxidase signature 64 79 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g1143 227 PRINTS Plant ascorbate peroxidase signature 82 92 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g1143 227 PRINTS Plant ascorbate peroxidase signature 96 120 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g1143 227 PRINTS Plant ascorbate peroxidase signature 121 139 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g1143 227 PRINTS Haem peroxidase superfamily signature 64 78 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g1143 227 PRINTS Haem peroxidase superfamily signature 172 187 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g1143 227 PRINTS Haem peroxidase superfamily signature 196 211 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g1143 227 PANTHER L-ASCORBATE PEROXIDASE 5, PEROXISOMAL 37 227 - -
Vvi4g1143 227 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 37 227 IPR044831 GO:0004601|GO:0034599
Vvi4g1143 227 ProSitePatterns Peroxidases proximal heme-ligand signature. 172 182 IPR019793 -
Vvi4g1143 227 Pfam Peroxidase 62 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g1143 227 Pfam Peroxidase 153 211 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g1143 227 Gene3D - 39 148 - -
Vvi4g1143 227 Gene3D Peroxidase, domain 2 155 219 - -
Vvi4g1143 227 SUPERFAMILY Heme-dependent peroxidases 48 213 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1143 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - vvi:104879121 303.908
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1143 . . . Bda10g00192 . . . . . . . . . . Sed14g1205 . Cpe10g00676 Bhi03g00841 Tan03g2100 Cmetu04g0811 . Hepe04g1608 . . Cla01g01992 Cam01g2091 Cec04g1748 Cco04g1813 Clacu01g2109 Cmu01g1985 Cre04g1662 . . . . . . . Cme08g00948 . . . . Bpe10g00164 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03346 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031815 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2