Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1146 ATGAGAGGGCGAGGCTGTGATGGATGGCTTGCCTCGCCTTCACAAACTGCTTCATGTATCTCTTCCTCGCCTTACACCTTGAAACCATCTCTTCTCTCTCTATTCTCGAGTAACAACAACCCATTTCTGATTTTCAAAAAACAAAACAACAACCAAAACGTTTTCTCTCCCATGGAAGTCCAAGCCTCAACCTCAGCCTCTGCACCAGCACCAACTCCAGCACCACTAGTTGTAAATGCAGAATACTACAAAGAAATCGAAAGGGCTCGTAGATACCTCCGTGCTCTCATTTCCAGCAAAAACTGTGCACCCATGATGCTCCGTCTAGCGTTTCATGATGCAGGCACTTATGATGCTCTCACAAAGACAGGGGGCCCAAATGGCTCCATCAGAAACCCACAAGAGCTTAATCATTCTGCAAATAGGGGTTTGGAAACGGCAGTTGATCTTTGCGAGAAGGTGAAAAGGAAGCATCCTTGCATTACATATGCTGACCTTTACCAGCTTGCTGGTGTTGTTGCAGTTGAGGTTACTGGAGGCCCCACTATTCACTTCGTCCCTGGTAGACAGGACTCTTTGTCTTCACCAAAAGAAGGGCTCCTCCCAGATGCTAACAAAGGTGCTGACCATTTAAGGTCGGTCTTTAACCGGATGGGTCTTGAGGACAAGGATATTGTGGCCCTCTCCGGAGGTCATACATTGGGAGGGGCACATAAGCAAGTTTCAGGCTTTGATGGCAAGTGGACAGAGGAGCCCTGGAAGTTCGACAATTCGTATTTCAAGGAGCTTTTGAAATCATCAACCAAGCGATTGTTTATATTTTCCACAGACCAAGCATTAATAAAGGATCCTAAATTCCTAGAATATGTTATGTTGTATGAACAGGATGAGGAGGCTTTCTTCAGAGATTATGCGGCATCCCACAAGAAGCTTTCGGAGCTAGGGTTTGTTCCACCTACATGGACTTCCAGGGTAATCACAGCTGTGAAGAACAGTTCAACCATGGCAAAAACTGCTGCAGGAGTTGCTTTTGCGACAACTGCTATAGCCATTACTTTCTACTATAGACAAAGAAGTCAAAGGAAAGAGGAGTAA 1095 45.66 MRGRGCDGWLASPSQTASCISSSPYTLKPSLLSLFSSNNNPFLIFKKQNNNQNVFSPMEVQASTSASAPAPTPAPLVVNAEYYKEIERARRYLRALISSKNCAPMMLRLAFHDAGTYDALTKTGGPNGSIRNPQELNHSANRGLETAVDLCEKVKRKHPCITYADLYQLAGVVAVEVTGGPTIHFVPGRQDSLSSPKEGLLPDANKGADHLRSVFNRMGLEDKDIVALSGGHTLGGAHKQVSGFDGKWTEEPWKFDNSYFKELLKSSTKRLFIFSTDQALIKDPKFLEYVMLYEQDEEAFFRDYAASHKKLSELGFVPPTWTSRVITAVKNSSTMAKTAAGVAFATTAIAITFYYRQRSQRKEE* 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20281249 20288177 - Vvi4g1146 Vvi4g1146 785925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1146 364 Gene3D - 90 315 - -
Vvi4g1146 364 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 74 357 IPR044831 GO:0004601|GO:0034599
Vvi4g1146 364 PRINTS Haem peroxidase superfamily signature 103 117 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g1146 364 PRINTS Haem peroxidase superfamily signature 161 178 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g1146 364 PRINTS Haem peroxidase superfamily signature 179 191 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g1146 364 PRINTS Haem peroxidase superfamily signature 224 239 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g1146 364 PRINTS Haem peroxidase superfamily signature 248 263 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g1146 364 ProSitePatterns Peroxidases active site signature. 103 114 IPR019794 GO:0004601
Vvi4g1146 364 ProSiteProfiles Plant heme peroxidase family profile. 94 337 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g1146 364 Pfam Peroxidase 93 296 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g1146 364 Gene3D Peroxidase, domain 2 202 308 - -
Vvi4g1146 364 SUPERFAMILY Heme-dependent peroxidases 82 325 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi4g1146 364 ProSitePatterns Peroxidases proximal heme-ligand signature. 224 234 IPR019793 -
Vvi4g1146 364 PANTHER L-ASCORBATE PEROXIDASE 5, PEROXISOMAL 74 357 - -
Vvi4g1146 364 CDD ascorbate_peroxidase 77 319 - -
Vvi4g1146 364 PRINTS Plant ascorbate peroxidase signature 82 102 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g1146 364 PRINTS Plant ascorbate peroxidase signature 103 118 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g1146 364 PRINTS Plant ascorbate peroxidase signature 121 131 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g1146 364 PRINTS Plant ascorbate peroxidase signature 135 159 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g1146 364 PRINTS Plant ascorbate peroxidase signature 160 178 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g1146 364 PRINTS Plant ascorbate peroxidase signature 179 191 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g1146 364 PRINTS Plant ascorbate peroxidase signature 200 217 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g1146 364 PRINTS Plant ascorbate peroxidase signature 218 239 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g1146 364 PRINTS Plant ascorbate peroxidase signature 240 264 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g1146 364 PRINTS Plant ascorbate peroxidase signature 292 316 IPR002207 GO:0004601|GO:0006979|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1146 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - vvi:104879121 572.778
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1146 Vvi18g248 ECH
Vvi3g152 Vvi4g1146 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1146 . . . . . . . . . . Cma03g00672 . Car03g00618 . . . . . . . . . . . . . . . . . . . . Cone6ag1693 Cone9ag1617 Lsi01g00584 . . . . Blo06g00285 . . . . . . . Cmo03g00697 . . . . . . . . . . . . . . . . . . . . . . . Chy02g00555 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031815 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2