Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1147 ATGGCGTCGGAAGCCCCTGCCACGACCGCCGTCTCCGCCAGCGTCACGGCTCCGCCTTCGGTGGTCAGTGGGTTCTCTAAGGACACATCGAGCGAGCTTGCTATGGTGGTGTCAAGAAACAGTAAAGATCTCGCTGAGATCGTCAAAGAGGTCGACGACTACTTTCTTAAAGCCGCCGACGCCGGTAGCGAAGTCTCATTACTCTTAGAAATTCCAAGGTCCACTTTCTCCAATCAGACTGGAGGTAAGGTTTATAGCTGTGGAAAGAGTTCGAATCCATTATGGTGTCCATGGGCTTCGAATTCGAAATTGAATGGGTTTGGGAGACTGTGTGAAGAGATGGTTGTTACTGATATAGCTGGTGGGGGTATTATCAGTGGTAGTAGCAGTCACTGTTCTACTGTGGAGAGGCTATATGCTTGGGAGAAGAAACTGTTCCAAGAGGTTAAGAATGCTGAGAGTATAAAGATAGAGCATGAGAAATGTGTAGCCCAGCTGAGGAAGTTGGAGGTAAAGAGGGCTGCTGACTATGTGAAGACTGAGAAAACCAAGAAAGAGGTTGAAAAGTTGGAGTCTAGGATGATGGTTGCATCCCAGGCCATTGAAACTACCTCTACTGAAATCATCAAATTAAGGGAGTCAGAGCTTTACCCACAACTCCTTGACATCGTAAAAGGATCGATGAGCATGTGGAGAAGCATGTACGAGTGCCACCAGGTCCAAATGCACATAGTTCAGCAGCTCAAATATCTCAATGCTATCCCATCAACTGAGCCCACATCCGAGATTCACAGGCAATCAACTCTCCAGCTCGAGCTTGAAGTCCAGCAGTGGCACTCAACCTTTTGCAGCCTAGTAAAAACCCAACGAGACTACATCCAAGCACTTACGGGCTGGCTCCGTCTTAGCCTTTTTCAGTTCAGCAAAAACCCACTATCCAAAACCAGACAGGAGTCCATGATTTACTCCCTTTGTGAAGAATGGCACCTTGCACTTGACCGGGTTCCAGACAAAGTGGCATCTGAAGGGATAAAGAGCTTGTTAACAGTAATTCATGCCATTGTAGTTCAACAAGCTGACGAGCAAAAACAAAAGAAGAGGTCAGAATCTGCATTTAAAGATCTTGAGAAGAAACTGGTTGAGCTTAGAGCACTGGAATGCAAACAATCCCCATTTTCAACGCCTGAATCATCTGCCATCACAAGAAGCAAGGACCCAATAGCAGAGAAGAGAGCAAAGGTGGCAACTTTGAGAGCAAAAGCAGAGGAGGAAAAGAGTAAGCATGAAAAGGCAGTGAGTGTAACAAGGTCTGTGACATTGAACAATTTGCAGATGGGGTTCCCACATGTCTTTCAGGCAGTGACAGGTTTTGCAAGTGTATGTACTCATGCATTTGAATCGGTTCACAACCAGGCCAAGTGTATGGACCAAGAGCTCGATGTGAAGAGGATACTGCCTTAA 1461 46.48 MASEAPATTAVSASVTAPPSVVSGFSKDTSSELAMVVSRNSKDLAEIVKEVDDYFLKAADAGSEVSLLLEIPRSTFSNQTGGKVYSCGKSSNPLWCPWASNSKLNGFGRLCEEMVVTDIAGGGIISGSSSHCSTVERLYAWEKKLFQEVKNAESIKIEHEKCVAQLRKLEVKRAADYVKTEKTKKEVEKLESRMMVASQAIETTSTEIIKLRESELYPQLLDIVKGSMSMWRSMYECHQVQMHIVQQLKYLNAIPSTEPTSEIHRQSTLQLELEVQQWHSTFCSLVKTQRDYIQALTGWLRLSLFQFSKNPLSKTRQESMIYSLCEEWHLALDRVPDKVASEGIKSLLTVIHAIVVQQADEQKQKKRSESAFKDLEKKLVELRALECKQSPFSTPESSAITRSKDPIAEKRAKVATLRAKAEEEKSKHEKAVSVTRSVTLNNLQMGFPHVFQAVTGFASVCTHAFESVHNQAKCMDQELDVKRILP* 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20288223 20291182 + Vvi4g1147 Vvi4g1147 785926

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1147 486 Coils Coil 358 385 - -
Vvi4g1147 486 Coils Coil 407 427 - -
Vvi4g1147 486 PANTHER SERINE HYDROXYMETHYLTRANSFERASE, PUTATIVE (DUF632)-RELATED 22 471 - -
Vvi4g1147 486 PANTHER UNCHARACTERIZED 22 471 - -
Vvi4g1147 486 Coils Coil 180 200 - -
Vvi4g1147 486 Pfam Protein of unknown function (DUF632) 44 352 IPR006867 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1147 - - - vvi:100245548 897.501
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1147 . . . . . . . . . . Cma03g00671 Cma07g00413 Car03g00617 Car07g00363 . Cpe19g00870 Cpe10g00677 Bhi03g00838 . . . . . . Cla01g01993 Cam01g2092 Cec04g1749 Cco04g1814 . Cmu01g1986 Cre04g1663 Cone8ag0861 Cone12ag0824 . . Lsi01g00583 . . Cme08g00949 Blo05g00705 . . . . Bpe06g00133 . . . Cmo03g00696 Cmo07g00409 . Cma20g00739 . . . . . . . . . . . . . . . . . . . Csa06g03347 Chy02g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007876 1 3 1 1 1 1 2 1 1 1 1 0 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36