Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g115 ATGGCCGATCCGTACTGGAGACGCGGTGCACCCTCAGACAGAGGCAGCATTCCAAGGTCCAGCTTTCCAGGCTACTTGCCGCTTGATCCATCTGTATCAGCAGCTCATCATTTGTGGGGCACTAACGATTTGCATGGTGCTCCTTCAGATTACCCACCAAAGGATATCTTACCAGTGCGGCCTGGGGCTCATGACTTTGATGATATTATGGGTATCAGAGTTCCCCCAAAACCTGTAATTGGTGGATTCACCGCCACAACAAACATTAAGGGCTACCCAAATCCTGTAGAAGATCCAAATTTAATAGGTCAAAGGCGAGATGTTGCACATGGTATTAGTCCAGGCATTCCAGACATTGAAAGGCCCAGTTCTTTTGGAAATGTTGAAAGCCTTCCACCCCCTGTGCAGGAATCAAATATTCTTTTTGTTGACGGGCTTCCAAAAGACTGTACCAGACGAGAAGTTGGCCATCTTTTCCGACCGTTTATTGGTTTTAAAGAAATCAGAGTTGTTCATAAGGAGCCCAGACATAGTGGAGATAAGGCCATGGTTTTGTGCTTTGTTGAGTTTAATGATGCAAGTTGTTCTCGGACTGCTTTAGAAGCCCTTCAAGGCTACAAGTTTGATGACAAGAAACCTGATTCCCCTACCTTAAGGATCCAGTTTGCACATTTCCCGTTCCGTCTACCATCTGATCTTGGGGTTCCTCTCTCTCTCTGA 720 46.25 MADPYWRRGAPSDRGSIPRSSFPGYLPLDPSVSAAHHLWGTNDLHGAPSDYPPKDILPVRPGAHDFDDIMGIRVPPKPVIGGFTATTNIKGYPNPVEDPNLIGQRRDVAHGISPGIPDIERPSSFGNVESLPPPVQESNILFVDGLPKDCTRREVGHLFRPFIGFKEIRVVHKEPRHSGDKAMVLCFVEFNDASCSRTALEALQGYKFDDKKPDSPTLRIQFAHFPFRLPSDLGVPLSL* 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1133489 1141654 - Vvi4g115 Vvi4g115 784894

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g115 239 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 212 IPR000504 GO:0003723
Vvi4g115 239 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 225 IPR000504 GO:0003723
Vvi4g115 239 Gene3D - 135 225 IPR012677 -
Vvi4g115 239 MobiDBLite consensus disorder prediction 1 21 - -
Vvi4g115 239 CDD RRM_RBPMS_like 139 221 - -
Vvi4g115 239 PANTHER PROTEIN COUCH POTATO 12 228 - -
Vvi4g115 239 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 12 228 - -
Vvi4g115 239 SUPERFAMILY RNA-binding domain, RBD 110 212 IPR035979 GO:0003676
Vvi4g115 239 SMART rrm1_1 140 221 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g115 - - - vvi:100257637 505.753
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g115 Blo01g01458 Blo12g01020 Bda01g00629 Bda03g00137 . Bpe02g00497 Bma04g00121 Bma01g02207 . . Cma01g01720 . Car09g00301 . . . Cpe06g00249 . . . . . . . Cla05g01849 Cam05g1973 Cec05g1986 Cco05g2045 Clacu05g1966 Cmu05g1847 Cre05g1971 Cone4ag1677 Cone7ag1275 . . Lsi04g01410 . . . . . . . . Bpe04g00119 . . . . Cmo09g00353 Cma09g00353 . Car01g01335 . . . Bhi09g03127 . . . . . . . . . . . . . . . . Cme07g00205
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004655 2 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 1 42