Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1153 ATGGCCTCTTCCGCCAATCCTTTCTCTCTTTCGCTATCCTCCGAGCTCGCTTCCAACTCTTCTCTCCACTGCGCCAACTCGTCCGAGGTCTTTCTCCGCTTCCCGAACTCTCCCGCGCCCCCCTCGCTCCGCTCTTCCTTCGTCTCGCCTATTAAGATTGAATTGAATCGAGTCGGTGTTTCTGCGTTGAAAGTGAGTCGAATCGGTTCAAGGATTTCGGCGAGTTCAACTCCGGTGATGGATCAGTCGCCGAGTCAGACGAGTCCTAGGGTTCCTACTGTTGTTGAGGTCGATTTGGGGAACCGGAGCTACCCGATCTACATCGGATCTGGATTGCTTCAACAACCCGAGCTTCTCCAGAGACATGTTCATGGGAAGAGAGCTCTTGTGGTCACCAACACCACAATTGCAGCATTATACCTTGATAAAGTAGTTGATGCTTTAACTCGTGGAAACCCAAATATTTCAGTTGAGAGTGTGATTTTGCCAGACGGTGAGAAGTACAAAAACATGGACACACTAATGAAAGTTTTTGACAAGGCAATTGAGTCACGGTTGGATAGACGTTGTACATTTGTTGCCGTTGGTGGTGGTGTTATTGGTGACATGTGTGGATTTGCTGCTGCTGCCTTCCTTCGTGGTGTTAATTTCATTCAGATTCCTACAACTGTAATGGCACAGGTGGATTCTTCAGTTGGAGGCAAAACTGGCATAAACCATCCTCTAGGAAAAAATTTGATTGGTGCTTTCTACCAACCTCAGTGTGTACTTATAGACACTGACACATTAAACACACTGCCAGAGAGGGAGTTGGCATCAGGTTTTGCTGAGGTTATTAAGTATGGGCTTATTAGGGATGCTGAATTCTTTGAGTGGCAAGAGAAGAATATGCAGGCATTAATGGCAAGGGATCCAGGTGCACTGGCTTATGCTATCAAGCGATCATGTGAAAACAAGGCTGAGGTAGTATCTTTAGATGAGAAGGAAAGTGGACTGAGGGCGACATTGAACTTGGGTCATACTTTTGGCCATGCAATAGAAACTGGGGTTGGTTATGGGCAGTGGCTCCATGGAGAAGCTGTTGCAGCTGGCATGGTCATGGCTGTCGACATGTCATACCGCCTTGGTTGGATTGATGATTCAATTGTGAAGCGAGTTCACAATATCATAAAGCAGGCTAAGCTACCCATTACCCCACCTGAAAGCATGACAGTGGAGATGTTCAAGTCAGTCATGGCGGTTGATAAGAAAGTGGCTGATGGACTGCTAAGGCTCATTCTCTTGAAAGGTCCTCTAGGCAACTGTGTTTTCACTGGTGACTATGACAGGAAGGCACTGGATGATACACTCCGGGCATTTGCCAAGTCCTGA 1371 47.19 MASSANPFSLSLSSELASNSSLHCANSSEVFLRFPNSPAPPSLRSSFVSPIKIELNRVGVSALKVSRIGSRISASSTPVMDQSPSQTSPRVPTVVEVDLGNRSYPIYIGSGLLQQPELLQRHVHGKRALVVTNTTIAALYLDKVVDALTRGNPNISVESVILPDGEKYKNMDTLMKVFDKAIESRLDRRCTFVAVGGGVIGDMCGFAAAAFLRGVNFIQIPTTVMAQVDSSVGGKTGINHPLGKNLIGAFYQPQCVLIDTDTLNTLPERELASGFAEVIKYGLIRDAEFFEWQEKNMQALMARDPGALAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGVGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNIIKQAKLPITPPESMTVEMFKSVMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLRAFAKS* 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20321484 20326332 + Vvi4g1153 Vvi4g1153 785932

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1153 456 TIGRFAM aroB: 3-dehydroquinate synthase 104 444 IPR016037 GO:0003856|GO:0005737|GO:0009073
Vvi4g1153 456 SUPERFAMILY Dehydroquinate synthase-like 96 449 - -
Vvi4g1153 456 Gene3D - 266 456 - -
Vvi4g1153 456 PANTHER 3-DEHYDROQUINATE SYNTHASE 91 452 - -
Vvi4g1153 456 Pfam 3-dehydroquinate synthase 160 418 IPR030960 -
Vvi4g1153 456 CDD DHQS 103 450 - -
Vvi4g1153 456 Hamap 3-dehydroquinate synthase [aroB]. 92 454 IPR016037 GO:0003856|GO:0005737|GO:0009073
Vvi4g1153 456 PANTHER 3-DEHYDROQUINATE SYNTHASE, CHLOROPLASTIC 91 452 - -
Vvi4g1153 456 Gene3D - 79 265 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1153 K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] - vvi:100266137 867.84
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1153 . . . . Bpe15g00482 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1695 Cone9ag1619 . . . . . . . Bda14g01069 . . . . . . . Cma16g01246 . . . . . . . . . . . . . . . . . . . Lsi07g01091 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009618 1 0 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 31