Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1154 ATGAGAGAGAACAAGTGTTGGATTCTCCATCCAACAGGTAGCAACAAACAAGGGCGTAAGTGTCACTCGTTAAGGCTGCAATGTAATTTGACCTCTGCGAGTAGTGCTCTACAAGGTCTTCTCAGGAAACTCGGTGCCGGACTCGACGAATTGTTGCCGTCGGCTGCCGTGGCCGCGACGCCGGGGAGTGGGCGGCTCAAGAAGATACTATCCTCACTGCGGGAGGAGGGCGAAGAAGGGCGTAAAATCGAGGCGTTGACGCAGCTCTGCGATTTGCTATTGATGGGGACGGAGGATTCGCTGTGTGCTTTTCCGGTTGACTCCTTCGTGCCGGTGCTTGTGGAATTGCTTAATTATGAGAGCAATGCGGACATAATGTTGCTTGCTGCTAGGGCAATTACGCATCTCTGCGACGTGTTGCCATCATCTTGCAGTGCGGTCTTGCATTACGGTGCGGTTCGGTGTTTCTGTGCCAAGCTGCTGGAAATTGAATGTATGGACTTGGCTGAACAGTCTTTGCAAGCTCTGAAGAAGATATCCCAGGAGCAGCCTACTGCCTGTTTGCGAGCAGGTGCTCTAATGGCAGTGCTTTCTTTTCTTGACTTCTTCCCAACAGGTGTTCAGAGAGTAGCATTGTCCACTGCTGCCAATATGTGTAAGAAACTCCCTCCAGATGCAGCCGACTTTGTGATGGAAGCTGTGCCTCTTTTGACAAACCTTCTTCAATATCAAGATTCCACGGTGTTAGAGCATTCTTCTGTCTGCTTGACTCGCATTGTGGAAGCAATTGCTTCATCCCCTGACAAGTTAGATGAACTATGCAATCATGGACTGATCGAACAAGTTACTGCACTTATTTCTACAAGTAATTCTGGAGGTGTTCAGGCATCCCTGAGCACATCTACATACACGGGCTTAATCCGGCTTCTTTCAATATGTGCAAAGGGGTCTCCCTTAGGAGCCAAAACTTTGCTTCACCTTGAAATCAGTGGCATTCTTAAAGATATACTTCCAGTTTCCAGCTTAATTGGAAGTGTTTCTGTTCCCCCTTCTTTGACCAGACCCCCTGATCAGATTTTCGAGATAGTGAACCTTGCAGATGAGCTTCTCCCCCCACTACCAGAAGGAACTATCTCCCACCTGAATTATTCTAGTTTTCAAATGAGAAGTTCTGCAGGAGAGAAGTCTCCTTCCAGTGGTTCTGGTAAGGAAGAAATTACTAATGGAAGTATGCCTGAGGCTTCAGCACGTGAGAAATTATTATGTGATCAACCAAAATTTCTGCAGCAGTTTGGAGTGGATCTTCTTCCTGTTTTAGTACAGGTATATGGGTCCACTGTGAATGTCCAAGTTCGCAACAAGTGTCTCTCTGTCATTGGAAAGTTAATGTACTTCTGCACAGCAGATATGATTCTATCTTTATTAAATTCAACAAACATATCGAGTTTCCTAGCTGGTGTTTTAGCATCGAAGGATCCGCAAGTTTTGATTCCTGGCCTCCAAATGGCTGAGATTCTCATGGAAAAGCTTCCTAAAACTTTCTCCAGGATGTTTGTGAGAGAAGGAGTGCTTCATGCTGTAGACACACTTATATCTCATGATTTGGAAAATGTAGCATCAGTAGAAATTCCATCTAGAAATTCTAGGAGACTGGCAGTTAGTACCCGTGCTAAAGCTTTCAAACATAAATACTTCCCTTCATGCCCTGGGGAAGCTGAGGTTGGAGTTACAGATGACCTTCTACGTTTGAAAAATCTCTGTGTTGAGTTGAATTTATGTGTAAATGATCAAAATACCAAGAGAAAGGGAAAATCTAAAGCTTCAGGACCCAACTTGACCAATCCTTCTGCCAATGCTGTATCCACCTTTGAGTTTATTAGTAGTGGAGTTGTTGCAGCTTTGCTGAACTACTTCTCTTGTGGTGCATTTTCCATGGTGAGAACATCAGAAGCTAACTTGTCTAAACTTCGACGGCTAGCATTTAGAAGGTTTAAGTCATTTATTGCAGTTGCCCTTCCTTCCAGCATTAAGGAAGGAGATGAAACTCCCCTGATTATTTTAATTCGGAATCTTCAAAATGCTTTATCCTCCTTGGAGCGATTTCCAGTTGTACTGAGCCATTCATCTAGGTCATCCAGTGGAAATGCACGTTTCTCATCCGGACTTAGTGCACTTTCTCAACCATTTAAGCTTCATCTCCGTAGAGCACAAGGAGACAAATCTCTACGTGATTACTCTTCAAATATTGTATTGATTGATCCATTGGCAAGTTTATCAGCTGTTGAAGAATTTCTTTGGCCCAGAGTTCTGCGAAGTGAATTGGGTCAGAAAAAAGACCCATCATTTGTTGAAAACTTGGAATCTGAAACCCCAACTACAGAGACTGGTGCTTCATTGTTTTCAACTTCTAATCCTGCTTGTACTTATCGCCATCCTGCTAGATCAAGATCATCAGTTGCTGTGGGAGGCACATCTGTAGAGACACCACCGCAAGGGAGAAGTGAAAACTCAATGCAAGGAAAGGGTAAAGCTCTTCAGGAGTCTGCTCAAGATGAGGAAAGAGGACCTCTGACAAGAAATATTGCATGCCGAGGAACTGCTTCAGATAAAGATTTGACCACAAAACCAGACTTTAATCCTGAGGATCGGGAAGTCAATATTTCTCCAGTTGAGATTGATGATGGTTTGGTAATTGAAGAGGATGATCTCTCAGACGATGAAGATGATGCCAATGAAGATGTGCTGAGAAATGATGTCCCATTTTGCACATCAGAGAAAGTGCATGATGTGAAATTGGGAGATCCTGTGGAGGATGGTATGGTTGCCTCTGCTGCAACTGAGGCCCAATCAAATCCTAGGTCTGGTTCAAATAATGCAGTAAATTCTGTGCATGCTTTTGGCTCAAAAGGTACAATGTCAATTGCTGCATCTGTTGCCATTGGCGGGTTAGTACCTCCAAACCGTGGAGGCATTAGGACAGGCTATGGCGAAATATTTATACCATCACATATCAGAGGGCAGACAACCAACAATCCCACTTATAATATATTAGCATTATTGCGTGTATTAGAATGTTTAATTCCACCTGAGAAATTCATCAATAGCAAGATCACACCCAAATTGTCTCGACAAATCCAGGATGCCCTGGCAGTATGTGGTGGTACTCTTCCCTCATGGTGTTATCAGTTGACCAAAGCATGTCCATTCTTGTTTCCTTTTGAGACCAGGAGGCAATATTTCTATTCAACTGCTTTTGGGTTGTCTCGTGCGTTGAATTGGCTTCAACAGCAACAAGGAGCTGATGGTCAAGGCTCTGCCAGTGAAAGAGAGGTTCGTCTAGGCAGATTACAGCGTCAGAAGGTTCGTGTTTCAAGAAATCGGATTTTGGATTCTGCCAGAAAAGTGATGGAGATGTATTCTAGCCAAAAGGCTGTTCTAGAAGTAGAGTATTTTGGTGAGGTTGGCACTGGATTGGGTCCAACCTTGGAGTTCTATACTCTGTTAAGTCATGATCTACAAAAAGCTGAACTGGGGATGTGGAGATCTAGAAGTGGAGTTCTTGTGCAAGCTCCTCTTGGATTGTTCCCTCGTCCTTGGTCTCCTACTGCAGATGCTTCTGATGGTAGCCCGTTTGCTAAAGTGATTGAATATTATCACTTGCTTGGACAAGTGATGGCTAAAGCGCTTCAAGATGGACGACTCTTGGATCTGCCGCTGTCTATGGCTTTTTATAAGCTTGTGCTTGGTCAAGATCTGGATTTGCATGACATCCTATCATTTGATGCTGAACTTGGGAAGATTTTGCAAGAACTGCAAGTCCTTGTTTGTCGGAAACAGTATCTGGATGGTGTGAGTGGTAATGGTTGCGATGCAACTGGTGGCTTATGTTTCCGTGGTGCCCCTGTTGAAGATCTCTGTCTAGATTTCACCCTTCCTGGCTATCCGGATTACATTCTGAAATCAGGCTATGAAAATGTCCTTGTGGATTCCGATAACTTGGATGAGTACGTATCATTGGTAGTTGATGCAACTGTCAAGTCAGGGCTAATGCATCAAATGGAAGCATTTAGAGCAGGGTTTAATCAGGTTTTTGACATTTCATCTCTGCAAATATTCTCTCCACATGAATTAGATTACTTGCTCTGTGGCCGTAGAGAATTGTGGAAGATGGAGACACTTGTTGATCACATAAAGTTTGATCATGGATACACTGCCAAGAGCCCTGCGATTATCAATTTACTTGAAATCATGGGAGAATTCACTCCTGAGCAGCAGCATGCATTCTGCCAATTCATTACTGGTGCACCTAGGCTTCCTCCTGGAGGTCTGGCAATGTTGAATCCAAAGTTGACCATTGTGAGAAAGCATTCCTCAACGATGAACCCGGCAACCAACATGATTGGACCTTCTGAATCAGCCGACGAGGATTTGCCCAGTGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCCTATTCCACCAAGGATATTATGTATAAGAAACTACTTTATGCCATCAATGAAGGACAGGGATCTTTTGATCTGTCGTAG 4551 43.9 MRENKCWILHPTGSNKQGRKCHSLRLQCNLTSASSALQGLLRKLGAGLDELLPSAAVAATPGSGRLKKILSSLREEGEEGRKIEALTQLCDLLLMGTEDSLCAFPVDSFVPVLVELLNYESNADIMLLAARAITHLCDVLPSSCSAVLHYGAVRCFCAKLLEIECMDLAEQSLQALKKISQEQPTACLRAGALMAVLSFLDFFPTGVQRVALSTAANMCKKLPPDAADFVMEAVPLLTNLLQYQDSTVLEHSSVCLTRIVEAIASSPDKLDELCNHGLIEQVTALISTSNSGGVQASLSTSTYTGLIRLLSICAKGSPLGAKTLLHLEISGILKDILPVSSLIGSVSVPPSLTRPPDQIFEIVNLADELLPPLPEGTISHLNYSSFQMRSSAGEKSPSSGSGKEEITNGSMPEASAREKLLCDQPKFLQQFGVDLLPVLVQVYGSTVNVQVRNKCLSVIGKLMYFCTADMILSLLNSTNISSFLAGVLASKDPQVLIPGLQMAEILMEKLPKTFSRMFVREGVLHAVDTLISHDLENVASVEIPSRNSRRLAVSTRAKAFKHKYFPSCPGEAEVGVTDDLLRLKNLCVELNLCVNDQNTKRKGKSKASGPNLTNPSANAVSTFEFISSGVVAALLNYFSCGAFSMVRTSEANLSKLRRLAFRRFKSFIAVALPSSIKEGDETPLIILIRNLQNALSSLERFPVVLSHSSRSSSGNARFSSGLSALSQPFKLHLRRAQGDKSLRDYSSNIVLIDPLASLSAVEEFLWPRVLRSELGQKKDPSFVENLESETPTTETGASLFSTSNPACTYRHPARSRSSVAVGGTSVETPPQGRSENSMQGKGKALQESAQDEERGPLTRNIACRGTASDKDLTTKPDFNPEDREVNISPVEIDDGLVIEEDDLSDDEDDANEDVLRNDVPFCTSEKVHDVKLGDPVEDGMVASAATEAQSNPRSGSNNAVNSVHAFGSKGTMSIAASVAIGGLVPPNRGGIRTGYGEIFIPSHIRGQTTNNPTYNILALLRVLECLIPPEKFINSKITPKLSRQIQDALAVCGGTLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALNWLQQQQGADGQGSASEREVRLGRLQRQKVRVSRNRILDSARKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKAELGMWRSRSGVLVQAPLGLFPRPWSPTADASDGSPFAKVIEYYHLLGQVMAKALQDGRLLDLPLSMAFYKLVLGQDLDLHDILSFDAELGKILQELQVLVCRKQYLDGVSGNGCDATGGLCFRGAPVEDLCLDFTLPGYPDYILKSGYENVLVDSDNLDEYVSLVVDATVKSGLMHQMEAFRAGFNQVFDISSLQIFSPHELDYLLCGRRELWKMETLVDHIKFDHGYTAKSPAIINLLEIMGEFTPEQQHAFCQFITGAPRLPPGGLAMLNPKLTIVRKHSSTMNPATNMIGPSESADEDLPSVMTCANYLKLPPYSTKDIMYKKLLYAINEGQGSFDLS* 1517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20327037 20339205 + Vvi4g1154 Vvi4g1154 785933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1154 1516 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 26 544 IPR045322 GO:0006511|GO:0061630
Vvi4g1154 1516 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 539 981 IPR045322 GO:0006511|GO:0061630
Vvi4g1154 1516 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 1027 1184 IPR045322 GO:0006511|GO:0061630
Vvi4g1154 1516 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 1186 1516 IPR045322 GO:0006511|GO:0061630
Vvi4g1154 1516 Pfam HECT-domain (ubiquitin-transferase) 1166 1516 IPR000569 GO:0004842
Vvi4g1154 1516 SUPERFAMILY ARM repeat 66 538 IPR016024 -
Vvi4g1154 1516 MobiDBLite consensus disorder prediction 818 844 - -
Vvi4g1154 1516 Gene3D - 418 541 IPR011989 -
Vvi4g1154 1516 Gene3D - 58 377 IPR011989 -
Vvi4g1154 1516 ProSiteProfiles HECT domain profile. 1143 1516 IPR000569 GO:0004842
Vvi4g1154 1516 SUPERFAMILY Hect, E3 ligase catalytic domain 1112 1509 IPR035983 GO:0004842
Vvi4g1154 1516 MobiDBLite consensus disorder prediction 781 897 - -
Vvi4g1154 1516 MobiDBLite consensus disorder prediction 390 408 - -
Vvi4g1154 1516 Gene3D Hect, E3 ligase catalytic domains 1059 1277 - -
Vvi4g1154 1516 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 1186 1516 - -
Vvi4g1154 1516 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 539 981 - -
Vvi4g1154 1516 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 26 544 - -
Vvi4g1154 1516 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 1027 1184 - -
Vvi4g1154 1516 MobiDBLite consensus disorder prediction 870 889 - -
Vvi4g1154 1516 MobiDBLite consensus disorder prediction 785 811 - -
Vvi4g1154 1516 CDD HECTc 1119 1511 IPR000569 GO:0004842
Vvi4g1154 1516 Gene3D Hect, E3 ligase catalytic domain 1388 1514 - -
Vvi4g1154 1516 MobiDBLite consensus disorder prediction 390 410 - -
Vvi4g1154 1516 SMART hect_3 1133 1516 IPR000569 GO:0004842
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1154 K10590 TRIP12; E3 ubiquitin-protein ligase TRIP12 [EC:2.3.2.26] - vvi:100266125 1745.71
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g154 Vvi4g1154 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1154 . . . . . . . . . Cmo20g01136 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g0197 . . . Cma20g01106 . . Cpe05g01103 . Bhi10g01854 Tan05g1142 Cmetu11g0032 . Hepe08g0290 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003449 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 2 2 2 1 1 3 4 2 48