Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1155 ATGTGCAAGCAAAAGGATGCTCCTGATCCAGTCATCAACACATGCAAGGGGAGGAACTGTGGAGATACATTTACAGGCCCCAATAGACCAAACAAGCGCTCAGTAAGTACAGAGTATTTGGAGACCCCCCATCTCAAAGGGCAGCAGAAGATCTTGCATTCTCTGTTCATCTCTAAGAATGGTACTCTTGCAAATTACTATATGTATTATAGTGTGACAAATTTTGGTAGAACTACGTCCTCCTTTGCTACGACTTGCTACTATGATGAAGCTCCTCTTGATGAATATGGTTTGCCAAGGGAAACCAAATGGGGCCACCTCCGAGACTTGCATGCTGCTTTGAGGTTGTCTAAGAAAGCTCTTCTTTGGGGAGTTACCTCTGCCCAAAAGTTGGGAGAGGACCTAGAGGCCCGAATCTACGAAAAGCCAGGTAGTAATATTTGTGCTACTTTCTTGTTGAATAACATTACTAGAACACCTACAACTACAACATTAAGGGGTTCCAAATACTACTTGCCCCAGCACTCCATAAGCAACCTCCCAGATTGCAAAACTGTCGTCTTCAACACACAGACAGTAGCGTCCAATTACTTGATCTTTCCCTTTTCAATGTTCGATAGTTTGAATGAACCCAACATGAAAACAGATGCATTGCCAACTTATGAAGAATGTCCCACTAAAACAAAGAGTCCCGTGGAACTGATGACCATGACCAAGGATACTACAGACTACTTGTGGTACACCACCAAGAAAGATGTTCTTCGTGTCCCTCAGGTTTCCAATCTAGGTCATGTGATGCATGCATTTTTAAATGGAGAATATGTGATGGAATTCTATCTAACAGGAACGAGACATGGAAGCAATGTAGAAAAAAGCTTTGTGTTCAATAAACCCATAACCTTAAAGGCAGGACTTAACCAGATAGCACCGTTGGGTGCCACGGTTGGATTACCAGATAGTGGTTCATACATGGAGCATAGGCTTGCTGGGGTACATAACGTAGCCATCCAAGGTCTCAACACTAGAACCATCGATCTGCCAAAGAATGGATGGGGACACAAGGTAGGCTTGAATGGAGACAAGCTCCATCTCTTCACACAACCTCCTTCCCAGTCAGTCTACCATGTACCGAGAGCCTTCTTGAAGACATCAGATAATCTTTTGGTTCTCTTCGAGGAAACAGGAAGAAACCCAGATGGAATAGAGATCCTAACTTTGAACAGAGATACGATCTGTTGCTACATAAGTGAACACCATCCAACACATGTGAGGTCATGGAAGAGGGAGGCAAGTGACATACAAATGTTTGTAGACGGTGTGAAGCCAAAGGCTAAGCTTTGGTGA 1344 43.68 MCKQKDAPDPVINTCKGRNCGDTFTGPNRPNKRSVSTEYLETPHLKGQQKILHSLFISKNGTLANYYMYYSVTNFGRTTSSFATTCYYDEAPLDEYGLPRETKWGHLRDLHAALRLSKKALLWGVTSAQKLGEDLEARIYEKPGSNICATFLLNNITRTPTTTTLRGSKYYLPQHSISNLPDCKTVVFNTQTVASNYLIFPFSMFDSLNEPNMKTDALPTYEECPTKTKSPVELMTMTKDTTDYLWYTTKKDVLRVPQVSNLGHVMHAFLNGEYVMEFYLTGTRHGSNVEKSFVFNKPITLKAGLNQIAPLGATVGLPDSGSYMEHRLAGVHNVAIQGLNTRTIDLPKNGWGHKVGLNGDKLHLFTQPPSQSVYHVPRAFLKTSDNLLVLFEETGRNPDGIEILTLNRDTICCYISEHHPTHVRSWKREASDIQMFVDGVKPKAKLW* 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20339632 20342566 - Vvi4g1155 Vvi4g1155 785934

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1155 447 PANTHER BETA-GALACTOSIDASE 14 1 367 - -
Vvi4g1155 447 PANTHER BETA-GALACTOSIDASE 14 368 446 - -
Vvi4g1155 447 Gene3D Glycosidases 6 118 - -
Vvi4g1155 447 PRINTS Glycosyl hydrolase family 35 signature 62 77 IPR001944 GO:0004553|GO:0005975
Vvi4g1155 447 PRINTS Glycosyl hydrolase family 35 signature 81 97 IPR001944 GO:0004553|GO:0005975
Vvi4g1155 447 SUPERFAMILY Galactose-binding domain-like 177 332 IPR008979 -
Vvi4g1155 447 SUPERFAMILY Galactose-binding domain-like 370 429 IPR008979 -
Vvi4g1155 447 Pfam Glycosyl hydrolases family 35 53 113 IPR031330 -
Vvi4g1155 447 PANTHER BETA-GALACTOSIDASE RELATED 1 367 IPR001944 GO:0004553|GO:0005975
Vvi4g1155 447 PANTHER BETA-GALACTOSIDASE RELATED 368 446 IPR001944 GO:0004553|GO:0005975
Vvi4g1155 447 Pfam Beta-sandwich domain in beta galactosidase 121 193 IPR041392 -
Vvi4g1155 447 SUPERFAMILY (Trans)glycosidases 1 117 IPR017853 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1155 - - - egr:104419643 453.366
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g156 Vvi4g1155 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1155 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma06g00533 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0069894 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1