Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1157 ATGGTAGAAAGAGCTGAAGACGAAGAGAAATGGCTGGCCGCCGGGATCGCCGGCCTTCAACAGAACGCCTTTTACATGCATCGCGCTCTGGACTCGAACAATCTGAGGGACGCCCTCAAATACTCGGCTCAGATGCTTTCCGAGCTTCGTACTTCGAGGCTCTCCCCTCATAAATACTACGAACTATACATGCGAGCATTTGATGAATTGAGGAAGCTGGAGATGTTCTTCAAGGAAGAGGCAAGGCGCGGTTGCTCTATTATCGATCTCTATGAACTTGTGCAACATGCAGGCAACATATTGCCTAGACTGTATCTTCTCTGTACAGTTGGATCTGTGTACATCAAATCTAAGGAGGCTCCTGCTAAGGATGTTCTTAAGGATCTTGTGGAAATGTGCCGTGGCATCCAACATCCTGTACGTGGCCTCTTCCTAAGGAGTTACCTTTCTCAAGTCAGTAGGGATAAACTACCTGATATTGGTTCTGAATATGAAGGGGGTGCTGACACTGTCATGGATGCTGTAGAGTTTTTACTCCAAAACTTCACAGAGATGAACAAACTTTGGGTGCGGATGCAACATCAGGGACCTGCACGGGAAAAGGAGAAACGGGAAAAAGAACGGAGCGAGCTTCGTGATCTCGTTGGGAAGAACCTGCATGTCCTTGGCCAGCTAGAGGGTGTTGATCTCGATATGTACAAAGAAACAGTCCTTCCCAGAGTTTTGGAGCAGGTTGTCAATTGTAAAGATGAGATTGCCCAATTTTATTTGATGGATTGCATAATTCAAGTCTTTCCTGATGAGTACCACTTGCAAACTCTTGAGACATTATTGGGGGCTTGCCCCCAGCTTCAGCCATCAGTTGACATCAAGACTGTGTTATCACAATTGATGGAAAGGCTTTCAAATTATGCTGCTTCAAGTGCAGAAGTGTTACCTGAATTTTTGCAAGTGGAAGCTTTTGCCAAGCTGAGTAATGCCATATGGAAGGTCATCGAAGCACAGGTTGACATGCCTATTTTTGGAGCTGTAACTCTATATTCATCTCTTCTCACTTTTACTCTGCATGTGCACCCTGATCGGCTTGATTATGTGGATCAAGTTCTGGGAGCATGTGTTACGAAACTCTCTAGTGCTGGAAAACTTGAAGATAGCAAATCAACAAAACAGATTGTTGCACTACTAAGTGCTCCATTGGAGAAATATAATGATATTGTGACTGTCCTGAAGCTTTCAAATTATCCCCGTGTCATGGAATATCTTGACAACAGAACAAATAAAGTGATGGCAATCGTTATAATTCAAAGCATTATGAAAAACAAAACGTGTATTGCTACTGCTGAAAAGGTTGAGGCATTGTTTGAATTAATAAAAGGGCTTATCAAGGATTTGGATGGGGATCTTCATGATGAGCTTGATGATGAGGATTTCAAAGAAGAGCAGAATTCTGTTGCACGTCTTATCCAGATGCTGTATAGTGATGATCCAGATGAGATGTTACAGATCATATGTGCTGTGAGGAAGCATTTCCTGACTGGAGGACCACAACGTCTACCCTATACCATTCCCCCCCTTGTTTTTTCTTCTCTTAAGTTGATCAGGAAACTGCAAGGTCAGGATGAAAATGTTGTTGGAGAAGAGGCATCGGCTTCACCAAAGAAAATTTTCCAGCTTTTAAATCAGACCATTGAGGCTTTGTCAGCTGTTCCAGCATCTGAACTGGCACTGCGGTTGTACCTGCAATGCGCAGAGGCTGCAAATGATTGTGATTTGGAACCTGTTGCTTATGAATTTTTCACCCAAGCTTACATATTGTATGAAGAAGAAATTGCGGATTCCAAAGCACAGGTGACTGCTCTACACCTAATAGTAGGGACTCTTCAGAGGATGCATGTCTTTGGTGTTGAGAACAGGGATACCTTAACACACAAGGCCACAGGGTATTCTGCAAAGCTGTTAAAGAAGCCTGATCAGTGCAGAGCCGTTTATGCATGCTCACATCTCTTCTGGGTTGACGATCAAGATAGCATCAGAGATGGAGAGAGGGTCCTGCTCTGCCTGAAGCGTGCTTTAAGAATTGCAAATGCTGCTCAACAAATGGCAAATGTGACACGGGGAAGCAGTGGATCTGCCACGCTCTTTGTTGAAATTTTGAACAAGTACCTCTATTTCTTTGAGAAGGGGAACCCACAAATCACTATTGCTGCAATCCAGAGCCTGATTGAATTAATTACAACTGAGATTCAAAGTGACACTATGTCACAGGATCCTGCTGCAGATGCATTCTTTGCCAGCACACTAAGGTACATCCAGTTCCAGAAACAGAAAGGTGGTGCACTGGCTGAGAAGTACGAGTCCATTAAGGTGTGA 2370 43.84 MVERAEDEEKWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSRLSPHKYYELYMRAFDELRKLEMFFKEEARRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQVSRDKLPDIGSEYEGGADTVMDAVEFLLQNFTEMNKLWVRMQHQGPAREKEKREKERSELRDLVGKNLHVLGQLEGVDLDMYKETVLPRVLEQVVNCKDEIAQFYLMDCIIQVFPDEYHLQTLETLLGACPQLQPSVDIKTVLSQLMERLSNYAASSAEVLPEFLQVEAFAKLSNAIWKVIEAQVDMPIFGAVTLYSSLLTFTLHVHPDRLDYVDQVLGACVTKLSSAGKLEDSKSTKQIVALLSAPLEKYNDIVTVLKLSNYPRVMEYLDNRTNKVMAIVIIQSIMKNKTCIATAEKVEALFELIKGLIKDLDGDLHDELDDEDFKEEQNSVARLIQMLYSDDPDEMLQIICAVRKHFLTGGPQRLPYTIPPLVFSSLKLIRKLQGQDENVVGEEASASPKKIFQLLNQTIEALSAVPASELALRLYLQCAEAANDCDLEPVAYEFFTQAYILYEEEIADSKAQVTALHLIVGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDSIRDGERVLLCLKRALRIANAAQQMANVTRGSSGSATLFVEILNKYLYFFEKGNPQITIAAIQSLIELITTEIQSDTMSQDPAADAFFASTLRYIQFQKQKGGALAEKYESIKV* 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20357828 20371146 - Vvi4g1157 Vvi4g1157 785936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1157 789 SUPERFAMILY ARM repeat 468 745 IPR016024 -
Vvi4g1157 789 Pfam Vacuolar protein sorting-associated protein 35 11 746 IPR005378 GO:0015031|GO:0030906|GO:0042147
Vvi4g1157 789 SUPERFAMILY ARM repeat 211 746 IPR016024 -
Vvi4g1157 789 PIRSF Retromer_Vps35 1 789 IPR005378 GO:0015031|GO:0030906|GO:0042147
Vvi4g1157 789 Gene3D - 465 774 IPR042491 -
Vvi4g1157 789 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 1 789 - -
Vvi4g1157 789 PANTHER VACUOLAR SORTING PROTEIN 35 1 789 IPR005378 GO:0015031|GO:0030906|GO:0042147
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1157 K18468 VPS35; vacuolar protein sorting-associated protein 35 - vvi:100248964 1515.75
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1157 Vvi18g1148 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1157 . Blo16g00090 . . Bpe15g00484 Bpe13g00406 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0827 . . . . . . . . Bda11g01827 . . . Bma03g01040 Bma06g00089 . . . Cma16g01247 . . . . . . . . . . . . . . . . . . . Lsi07g01089 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001755 3 3 2 3 2 2 4 2 2 2 1 1 4 2 1 3 1 2 4 2 2 2 2 2 2 1 2 4 3 2 68