Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g116 ATGGAGAAGGTGGCGGCAGCGAAGCAGTTCATAGAGAACCACTACAGAACTCAGATGAAGACCATCCAAGAGCGGAAGGAGAGACGCTGGGTTTTAGAAAGAAGATTGGCTTCTTCAGATGTGCCAAAGGAGGAACAGATCAACTTGATAAAGGATTTAGAGCGGAAAGAAACAGAGTTTATGCGACTTAAGAGGCACAAAATATGTGTTGATGATTTTGAGCTCCTGACCATCATTGGTAGAGGAGCCTTTGGTGAGGTTCGTCTATGTCGGGAGAAGAAATCTGAAAATATTTATGCCATGAAAAAGTTGAAAAAATCTGAAATGCTTATACGAGGACAGGTGGAACATGTTAGAGCTGAGAGAAATTTGCTGGCGGAAGTTGCCAGTCACTGCATAGTGAAACTGTACTACTCATTTCAAGATGCTGAGTACCTATATCTGATTATGGAATATCTGCCTGGTGGTGACATGATGACTCTGCTGATGAGAGAAGACACCCTGTCTGAAAGTGTGGCTAAATTTTACATTGCCCAGAGTGTCCTGGCAATAGAGTCGATTCACAAACATAACTACATTCACAGGGATATCAAACCTGACAATCTTCTTCTGGACAAAAATGGTCACATGAAGCTCTCAGATTTTGGCCTTTGTAAGCCTCTTGATTGCAGAACCTTGTCTGCACTGAAGGAGGATGAAGTAATGGATGATGAGAATTCAAGGGAATCAATGGATATTGATGGAGGCTTCCCTGATGCGGATAATAGAAGTAGTTGGAAAAGTCCTCGTGAGCAGCTTCAGCATTGGCAGATGAACAGGAGGAAGTTGGCATTTTCAACGGTGGGGACACCTGACTATATTGCTCCTGAAGTATTATTGAAGAAAGGATATGGAATGGAATGTGATTGGTGGTCACTAGGTGCAATAATGTATGAAATGCTTGTTGGTTATCCTCCATTTTACTCAGACGATCCCATGACCACATGCAGAAAGATTGTTCATTGGAAAAATCATCTAAAATTCCCAGAAGATCCAAAATTAACCGCTGAGGCGAAGGATCTCATTTATAGGTTGCTTTGTGATGTTGAACATAGGCTAGGCACTGGAGGGGTGGGCCAAATTAAAGCTCATCCTTGGTTCAAGGATGTTGTATGGGATAAACTCTATGAGATGGAGGCTGCATTTAAACCAGAAGTCAATGGGGAGCTAGATACTCGGAATTTTATGAAGTTTGATGAACTGGATCCTCCAACACAGGCAAGAAGTGGCTCGGGACCCTCACGGAAGATGCTATTAACTCCTAAAGATTTGAGTTTTGTTGGCTATACATACAAGAACTTTGATGCTCTCAAAGGGCTTCGCCCTTCTTCTGGTGATGCTAGAGCAGATTATACTGCTAGGGAGACAGCTGATGATACAGATGTGCAGATGCTTGCTCCATCAGGCGATCCCATGTCACCATAA 1464 42.9 MEKVAAAKQFIENHYRTQMKTIQERKERRWVLERRLASSDVPKEEQINLIKDLERKETEFMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSENIYAMKKLKKSEMLIRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLSESVAKFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCRTLSALKEDEVMDDENSRESMDIDGGFPDADNRSSWKSPREQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMTTCRKIVHWKNHLKFPEDPKLTAEAKDLIYRLLCDVEHRLGTGGVGQIKAHPWFKDVVWDKLYEMEAAFKPEVNGELDTRNFMKFDELDPPTQARSGSGPSRKMLLTPKDLSFVGYTYKNFDALKGLRPSSGDARADYTARETADDTDVQMLAPSGDPMSP* 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1147884 1166311 + Vvi4g116 Vvi4g116 784895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g116 487 SMART serkin_6 73 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g116 487 CDD STKc_NDR_like 71 445 - -
Vvi4g116 487 Gene3D Phosphorylase Kinase; domain 1 71 156 - -
Vvi4g116 487 Gene3D Phosphorylase Kinase; domain 1 399 409 - -
Vvi4g116 487 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Vvi4g116 487 PANTHER AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN 1 468 - -
Vvi4g116 487 Pfam Protein kinase domain 74 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g116 487 Pfam Protein kinase domain 272 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g116 487 SUPERFAMILY Protein kinase-like (PK-like) 57 427 IPR011009 -
Vvi4g116 487 ProSiteProfiles Protein kinase domain profile. 73 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g116 487 SMART pkinase_C_6 381 446 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi4g116 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Vvi4g116 487 MobiDBLite consensus disorder prediction 453 487 - -
Vvi4g116 487 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 468 - -
Vvi4g116 487 MobiDBLite consensus disorder prediction 237 258 - -
Vvi4g116 487 ProSiteProfiles AGC-kinase C-terminal domain profile. 381 454 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi4g116 487 Gene3D Transferase(Phosphotransferase) domain 1 157 225 - -
Vvi4g116 487 Gene3D Transferase(Phosphotransferase) domain 1 279 398 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g116 Vvi11g143 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76592 PF00069 Pkinase 2.00E-42 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g116 K08790 - vvi:100252504 999.193