Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1163 ATGGCTGAGTCAAAACCTTCCGATACTAGCACGACTAGGAGGAGCTCATCATGGTCCTTTGGTCTTCTCGTCTTGATTCTTACTCCCGTTGCAGCGGCCATCTTTCTCTACCAACTCGACTCCTTTGATCCAGCTTCTCTGCCCACTCACGAGTTTTCACAGGAACCCATGCCTGTGCCGAAGCTCAACCCTCGAATGCTGCAAGGTTCTGAGATGATTGGGCAGGGGAATCTGTTGGGCCCAGAGGACATTGCCTATGACGCAAACTCACACCTAATCTACACAGGCTGTGCTGATGGCTGGGTCAAGCGAGTCACCTTGAACGAGTCGGCTGCCAACTCGGTCGTCCATAACTGGGCCTTCACCGGTGGAAGACCTCTCGGCGTCGCTCTCGGTCGAGCTGGCGAAGTTCTCGTCGCCGATGCCGAAAAGGGTCTATTGGAGATAAGTGGAGATGGTGTGATGAAACTATTGACCGATGAGGCTGAAGGCCTAAAGTTCAAACAAACGAACGCTGTAGATGTAGCTGTTGATGGTATGATTTATTTTACAGATGCTTCCTATAAATACGGGTTGATAGAGTTCATATGGGAGATATTGGAGGGTAGGCCCCATGGTAGACTACTGAGCTTTGATCCATCGACTCAAGAGACTATAGTGCTTTTACGTGATCTTTACCTTGCTAATGGTGTTGTCGTCTCACCTGATCAGACTTCTGTGGTCTTCTGCGAAACTCTCATGAAAAGGTGTATAAAATATTATATACAAGGCGAGAGAAAGGGGTCCATGGAAAAGTTCATTGATAATTTGTCTGGCATGCCTGACAACATCTTATATGATGGGGAAGGTCATTATTGGATTGCATTAGCCACGGGGACTAAAGGTCTTTGGGACTTGGCACTCAAGTATCCTTCAATTCGAAAAGTTATGGCAATCTTGGAGAGGTACATTGGAAGGCCACATATCGAGAAAAATGGTGGGATTTTGGCAGTTGATTTAGAAGGAAAACCGATTGCCCACTATTATGATCCTGAATTGTCAATGGTGTCAAGTGGGATCAAGGTTGGCAAGTATTTATATTGTGGTTCCTTTGTCAAACCCTACATTATCCGCCTTGATCTTGATCAACATGCTGCCCATACCATCACGAGAATTAATGTTCCAATTTGGTTAATGAAGAGGCTGCCAGCTGGTTTTCAGATGCCATTAAAATTTTCAGAAAAAGAAAGATGGAAGGAGCCTTTTGTATCCCGTTGTCTATCTCGTCTTCTTCCTTCTTCTGTGGAGAGTAACCGAGTGAGTGCGGCACCAATGGCTAAGTCAAAGCCTTCAGATCCTAACACCACTAGGAAGAGCTCATCATGGTCTTTGGCTCTTCTTGTCTCCATTCTTACTCCCGTTGCAGCCGCCATCTTTCTCTACCAATTCGATTCCTTTGATCCCGCTTCTCTGCCCACTCACGTGTTTTCACAGGAACCCATGTCTGTCCCCAGGATCAACTCTCGTCTGCTGCATGAATCTGAGATGATCGGGCTTGGGAAGCTGTTGGGTCCAGAGGACATAGCCTATGATACCAACTCACACCTAATCTACACAGGCTGTGCTGATGGCTGGATTAAGAAAGTCACCTTGAACGACTCGGCTGTCAACTCGGTCGTTCATGACTGGGCCTTCACCGGTGGAAGACCTCTCGGCGTCGTTCTCGGTCGCGCCGGTGAGGTTCTCGTTGCCGACGCCGACAAGGGTCTACTGGAGATAAGTGAAGATGGTGTGGTTAAACTGTTGACAAATGAGGCTGAGGGCATAAGATTCAAACTAACGGACGCTGTGGATGTAGCTGTTGATGGTATGATTTATTTTACAGATGCTTCCTATAAATACAGTTTCAAAGATTTCATATGGGACATGTTGGAGCTTAGGCCCCATGGTAGACTACTGAGCTTTGACCCATCAACGCAAGAGACAAAAGTGCTGGTTCGTGATCTCTACTTTGCCAATGGTGTTGTCGTCTCACCTGATCAGACGTTCCTGATCTTTTGCGAATCCTTCATGAAAAGGTGTTCGAAATACTATTTACAAGGTGAGCGAAAGGGATCTATGGACAAATTCATTGATAATTTGCCTGGTATGCCCGACAACATCTTATATGATGGGGAAGGCCATTATTGGATTGGATTAGCCACGGGATACAATGATCTTTGGGACTTGGCATTCAAATATCCTTCAATTCGAAAGGTTATGGCAATCATGGAGAAGTTCATCGGGATGCCAGAAATCGAGAAAAATGGTGGGGTTTTGGCAATTGATTTGGAAGGAAAACCGATTGCTCACTATTATGATCCTAAATTGTCATTAGTGTCAAGTGGGATCAAGATTGACAAGTATTTATATTGTGGTTTTATTGTTAAACCCTACATGATTCGCCTTGATCTTGATCAACATGCTGCTCGCACCACCTTGTAA 2463 45.72 MAESKPSDTSTTRRSSSWSFGLLVLILTPVAAAIFLYQLDSFDPASLPTHEFSQEPMPVPKLNPRMLQGSEMIGQGNLLGPEDIAYDANSHLIYTGCADGWVKRVTLNESAANSVVHNWAFTGGRPLGVALGRAGEVLVADAEKGLLEISGDGVMKLLTDEAEGLKFKQTNAVDVAVDGMIYFTDASYKYGLIEFIWEILEGRPHGRLLSFDPSTQETIVLLRDLYLANGVVVSPDQTSVVFCETLMKRCIKYYIQGERKGSMEKFIDNLSGMPDNILYDGEGHYWIALATGTKGLWDLALKYPSIRKVMAILERYIGRPHIEKNGGILAVDLEGKPIAHYYDPELSMVSSGIKVGKYLYCGSFVKPYIIRLDLDQHAAHTITRINVPIWLMKRLPAGFQMPLKFSEKERWKEPFVSRCLSRLLPSSVESNRVSAAPMAKSKPSDPNTTRKSSSWSLALLVSILTPVAAAIFLYQFDSFDPASLPTHVFSQEPMSVPRINSRLLHESEMIGLGKLLGPEDIAYDTNSHLIYTGCADGWIKKVTLNDSAVNSVVHDWAFTGGRPLGVVLGRAGEVLVADADKGLLEISEDGVVKLLTNEAEGIRFKLTDAVDVAVDGMIYFTDASYKYSFKDFIWDMLELRPHGRLLSFDPSTQETKVLVRDLYFANGVVVSPDQTFLIFCESFMKRCSKYYLQGERKGSMDKFIDNLPGMPDNILYDGEGHYWIGLATGYNDLWDLAFKYPSIRKVMAIMEKFIGMPEIEKNGGVLAIDLEGKPIAHYYDPKLSLVSSGIKIDKYLYCGFIVKPYMIRLDLDQHAARTTL* 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20405865 20426069 + Vvi4g1163 Vvi4g1163 785942

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1163 820 PANTHER STRICTOSIDINE SYNTHASE-RELATED 20 372 - -
Vvi4g1163 820 PANTHER STRICTOSIDINE SYNTHASE-RELATED 456 809 - -
Vvi4g1163 820 SUPERFAMILY Calcium-dependent phosphotriesterase 503 803 - -
Vvi4g1163 820 Pfam Strictosidine synthase-like, N-terminal 67 105 - -
Vvi4g1163 820 Pfam Strictosidine synthase-like, N-terminal 504 540 - -
Vvi4g1163 820 SUPERFAMILY Calcium-dependent phosphotriesterase 68 375 - -
Vvi4g1163 820 PANTHER PROTEIN STRICTOSIDINE SYNTHASE-LIKE 4-RELATED 20 372 - -
Vvi4g1163 820 PANTHER PROTEIN STRICTOSIDINE SYNTHASE-LIKE 4-RELATED 456 809 - -
Vvi4g1163 820 Gene3D - 66 384 IPR011042 -
Vvi4g1163 820 Gene3D - 501 771 IPR011042 -
Vvi4g1163 820 Pfam Strictosidine synthase 171 258 IPR018119 GO:0009058|GO:0016844
Vvi4g1163 820 Pfam Strictosidine synthase 608 694 IPR018119 GO:0009058|GO:0016844
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1163 - - - vvi:100254111 777.704
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1163 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g01542 Cam01g1613 Cec04g1258 Cco04g1331 Clacu01g1638 Cmu01g1525 Cre04g1203 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005821 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 10 39