Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1175 ATGCAAAAAAATAAACACCATCGTAGCTCTTATGGCCCAAATGAGTTAAGTCTGTGTGTTGTGAGCTTAGTTATTATATGGATCACATATTGGATTCGTAGATGGAAGAACCCCAGATGCAATGTAACACTTCCTCCTGGTTCTCTGGGCTTCCCACTCATTGGAGAAAGCATTCAGTTTCTCATTTCCTGTAGCAACTCTTTAGATCTTCACCCATTTTTCAGAAAAAGAATTCAGAAATATGGCCCTTTGTTCAAAACAAGCATGCTTGGTCGACAAGTGGTGGTCACAGCTGACCCGGAGGCCAACCATTTCATCCTTGAACAAGAGGGGAAGTCAGTGGAAATGTGTTACTTGGACTCTGTAGCTCAGCTTTGCGGACACGATGAGTCATCTGCTGGTGCAACTGGTCATATTCACAAGTATCTTAGGACCCTGATTCTGAATCACTTCGGCTATGAGCGCCTCAGATATAAGCTACTCAAGAAAGTGGAAGCCATGGCACATAAAAGCCTGGGTGCTTGGTCGAGCCAACCGTCTGTGGAGTTGAATCGTGCAACTTCGCAGATAATGTTAGATTTCATTTCAAAGGAGTTGTTTAGCTATGACCCAAAAGGATGCACAGAAAGCATGGGCGATGCATTCATCGACTTTTTAGATAGCTTAGCGTCCGTCCCCTTGAACATACCTGGTACAACGTTTCATAAATGCTTGAAGAACCAAAAGAAGACAATGAAGATTCTGAGGGAGATAGTAGACGAGAGGTGTGCTTCTCCTGAGATACGCCGAGGTGATTTTCTTGATTATTTCCTGGAAGGCATGAAAAAGGAGGCGTTCATAACCAAAGATTTCATTGCGTTCGTAATGTTTGGGCTTCTCTTTGCTAGCTTTGAGTCGATTCCCATCATGCTTTCTTTAGCCCTTAAGTTAATAATGGAGCACCCACTAGTGTTGCAAGAATTGAAGAATGAACATGAAGCTATTCTTAGAAATAAGGATACTTCAAATTTCACACTCACGTGGGAAGACTACAAATCCATGACTTTTACACTTCATGTCATCGATGAAACACTTAGGATGGCAAATGTTGGTCTGGGGAATTTTAGAAAAGCTCTAGAAGACATAAAAATAAAGGGGCACACAATTCCAGCAGGGTGGACAATTTTAGTTGTCTCCTCAGTACTTCACATGGACCCAAATATATACCCTGATCCTCTTGTTTTCAACCCATGGAGGTGGAAGGATGGAAGATCTAAAATCACAACCAAGAATTTCACGCCATTCGGCGGGGGCATACGCTTTTGTCCAGGAGCAGAACTTAGCAAGCTGACAATGGCCATATTTCTTCATGTGGCAGTCACCAAATACAGGTTTACAAAAATTAAGGGAGGAAACCTAGTTCGAAATCCAGTTTTAAAATTTAAAGACGGGTTTCATATCAAGGTTTCAAAGAAGATGAGTCATGAAGATGGTGCTGAAAGAGAAGCCAAGTCAGGGAGTGTATCAATCATGTAG 1515 42.11 MQKNKHHRSSYGPNELSLCVVSLVIIWITYWIRRWKNPRCNVTLPPGSLGFPLIGESIQFLISCSNSLDLHPFFRKRIQKYGPLFKTSMLGRQVVVTADPEANHFILEQEGKSVEMCYLDSVAQLCGHDESSAGATGHIHKYLRTLILNHFGYERLRYKLLKKVEAMAHKSLGAWSSQPSVELNRATSQIMLDFISKELFSYDPKGCTESMGDAFIDFLDSLASVPLNIPGTTFHKCLKNQKKTMKILREIVDERCASPEIRRGDFLDYFLEGMKKEAFITKDFIAFVMFGLLFASFESIPIMLSLALKLIMEHPLVLQELKNEHEAILRNKDTSNFTLTWEDYKSMTFTLHVIDETLRMANVGLGNFRKALEDIKIKGHTIPAGWTILVVSSVLHMDPNIYPDPLVFNPWRWKDGRSKITTKNFTPFGGGIRFCPGAELSKLTMAIFLHVAVTKYRFTKIKGGNLVRNPVLKFKDGFHIKVSKKMSHEDGAEREAKSGSVSIM* 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20522828 20529516 - Vvi4g1175 Vvi4g1175 785954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1175 504 Gene3D Cytochrome P450 36 486 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1175 504 Pfam Cytochrome P450 45 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1175 504 PRINTS E-class P450 group IV signature 72 95 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1175 504 PRINTS E-class P450 group IV signature 347 363 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1175 504 PRINTS E-class P450 group IV signature 396 414 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1175 504 PRINTS E-class P450 group IV signature 419 435 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1175 504 PRINTS E-class P450 group IV signature 435 453 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1175 504 SUPERFAMILY Cytochrome P450 32 483 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1175 504 PANTHER CYTOCHROME P450 26 20 482 - -
Vvi4g1175 504 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 428 437 IPR017972 GO:0005506|GO:0016705
Vvi4g1175 504 PANTHER CYTOCHROME P450 87A3-LIKE 20 482 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1175 - - - vvi:100264506 840.106
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1175 Vvi18g108 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1175 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe06g00332 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001690 4 2 3 4 3 2 2 2 3 2 3 2 2 2 2 1 2 2 2 3 1 2 2 2 2 1 0 2 2 8 70