Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1176 ATGTGGCCTATTGGTTTGTGCATAGTGACATTAGTTATCATATGGGTCACAAATTGGATTCATAGATGGAGGAACCCCAGATGCAATGGTACACTTCCTCCTGGCACCCTGGGCTTTCCATTCATTGGAGAAACCATTCAATTTTTCATTCCCGGCCACTCCTTGGATCTTCTACCATTCTTCAAGAAAAGAGAAATAGGATTCATTTTCTTTCATTTTATTTCATCAATTGAATATGGTCGTCTGTTCCGGACAAGCCTAGTGGGTCGACCGGTTGCGGTAGCAGCTGACCCTGAAGTGAACCATTTCATCCTTCAAGAAGAGGGGAAGTCGGTGGAAATGTTTTACTTGGATTCTATTGTTAAGCTTTTTGGGAAAGATGGGGCATCCACCCATGCAACCGGTCACGTTCACAAGTATCTCAGGACACTGGTTATGAATTACTTTGGCTTCGAGAGCCTCAGAGATAAGCTACTTCCTAAAGTGGAAGCAGTGGCTCGTAAAAGCTTAGACACTTGGTCGAGCCAACCATCTGTGGAACTGAATTATGCGATTTCACAGGTAATGTTTGAGTTCATATCGATGGAGCTGTTCAGTTATGATCCAAGCGCATCCACAGAAAGTATGAGCGATGCATTCATTAACTTTCTGAAGGGTCTAGTGTCTATCCCCTTGAACATTCCTGGTACAACTTTTCATAAATGTTTGAAGAACCAGAAGAAGGTAATGAAGATGCTGAGGGAGATAGTGGAGGAGAGGTGTGCTTCTCCTGAGAGACGCCATGGTGATGTTCTTGATTATTTCCTGGAAGAAATGAAAAGCAAAACATTCATAACAAAGGATTTTATTGTCTATATAATGTTTGGGCTTCTCTTTGCTACCTTCGAGTCGATCCCCACTATGTTCACTCTAGTCTTTAAATTAATAATGGAGCACCCACTGGTGTGGCAAGAATTGAAGGATGAGCATGAGGCTATTCTTAGAAATAGTCAGACTTCAAATTCCACAATCACATGGGAAGATTACAAGTCCATGACTTTCACATTTGATGTTATCAATGAGGCACTTAGAATGGGAAATATTAGTCTTGGGAGTTTTAGAAGAGCCGTGGAAGATGTAAGGATAAATGGATATACAATTCCAGCAGGGTGGATAATTTTAGTTGTCCCTTCAGCACTTCACATGGACCCTGAAACATACCCCGATCCTCTTGTTTTCAACCCATGGCGATGGAAGGAGGATGGGGGATCAAAGATCAGAGTTAAGAATTTCACACCTTTTGGAAGGGGTATACGCTCTTGTCCAGGGGCAGAACTCAGCAAGCTTGTGGCAGCCACATTCATCCATGCGGCAGTCACCAAATACAGGTTTACGAAAATTAAGGGAGGACGTGTAGTTCGAAATCCAATGTTGAAATTTAAGGATGGGTTTTACGTTAAGGTTTCGGAGATGGTCACTGAAGGTGGTGGCTCAGCTGCTGAAGATGCTTGA 1491 42.72 MWPIGLCIVTLVIIWVTNWIHRWRNPRCNGTLPPGTLGFPFIGETIQFFIPGHSLDLLPFFKKREIGFIFFHFISSIEYGRLFRTSLVGRPVAVAADPEVNHFILQEEGKSVEMFYLDSIVKLFGKDGASTHATGHVHKYLRTLVMNYFGFESLRDKLLPKVEAVARKSLDTWSSQPSVELNYAISQVMFEFISMELFSYDPSASTESMSDAFINFLKGLVSIPLNIPGTTFHKCLKNQKKVMKMLREIVEERCASPERRHGDVLDYFLEEMKSKTFITKDFIVYIMFGLLFATFESIPTMFTLVFKLIMEHPLVWQELKDEHEAILRNSQTSNSTITWEDYKSMTFTFDVINEALRMGNISLGSFRRAVEDVRINGYTIPAGWIILVVPSALHMDPETYPDPLVFNPWRWKEDGGSKIRVKNFTPFGRGIRSCPGAELSKLVAATFIHAAVTKYRFTKIKGGRVVRNPMLKFKDGFYVKVSEMVTEGGGSAAEDA* 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20530086 20532381 - Vvi4g1176 Vvi4g1176 785955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1176 496 PRINTS E-class P450 group IV signature 32 49 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1176 496 PRINTS E-class P450 group IV signature 345 361 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1176 496 PRINTS E-class P450 group IV signature 378 392 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1176 496 PRINTS E-class P450 group IV signature 394 412 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1176 496 PRINTS E-class P450 group IV signature 418 434 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1176 496 PANTHER CYTOCHROME P450 87A3-LIKE 8 481 - -
Vvi4g1176 496 Pfam Cytochrome P450 78 466 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1176 496 PANTHER CYTOCHROME P450 26 8 481 - -
Vvi4g1176 496 SUPERFAMILY Cytochrome P450 30 481 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1176 496 Gene3D Cytochrome P450 25 485 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1176 496 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 427 436 IPR017972 GO:0005506|GO:0016705
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1176 - - - vvi:100267946 973.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1176 Vvi18g107 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1176 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001690 4 2 3 4 3 2 2 2 3 2 3 2 2 2 2 1 2 2 2 3 1 2 2 2 2 1 0 2 2 8 70