Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1177 ATGGCGAAGAGATCGTTAGAGATAAAAAGGGAATACGAAAGACAAGAAGAGTATGAAACGGAGGATGAAGTGGGAGAATCTGAAAATGATGATGAAACTGTTGATTACGGTGGTGGTGGTGATGGAGTAGAGGAGGAGGAGGAGGAGGAGGAGCAGGAGGAGCGGGAGGAGGAAGTGGAGGACAGAAGAAAAAGGGCGTTGATAAGGATAGTTTCGGGGCAGAGAAGGGGAGTTCCGTCGAATACGCTGTGTTGTCAGGCCGATGATTGTGGTGTGGACTTGAGGGCGGCGAAGAGGTACCACAGAAGGCACAAGGTCTGCGAGCGACATGCTAAGGCGGCCTTTGTTTTCCTGGGCGGCATTGAGCAGAGGTTTTGCCAGCAGTGTAGCAGATTCCATGAAATTTCTCAGTTTGATGATACCAAAAGAAGCTGTCGAAAGCGGCTGGCTGGACATAACCAGCGCAGAAGAAAGAACCAACCGGACCCTCCTCACACAGAGGATAGACGGAAACCACCGAATTCTAAAATGAATGCTAGCTCACTCAAGGCCACAGAGCATTCGGACGACAATGAACTATCTTTTCGAGGGCAGAGCAATATCAGGCATTTTCGAATTAGGTGA 624 49.52 MAKRSLEIKREYERQEEYETEDEVGESENDDETVDYGGGGDGVEEEEEEEEQEEREEEVEDRRKRALIRIVSGQRRGVPSNTLCCQADDCGVDLRAAKRYHRRHKVCERHAKAAFVFLGGIEQRFCQQCSRFHEISQFDDTKRSCRKRLAGHNQRRRKNQPDPPHTEDRRKPPNSKMNASSLKATEHSDDNELSFRGQSNIRHFRIR* 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20536348 20537931 + Vvi4g1177 Vvi4g1177 785956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1177 207 MobiDBLite consensus disorder prediction 17 56 - -
Vvi4g1177 207 PANTHER - 7 207 - -
Vvi4g1177 207 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 7 207 IPR044817 GO:0003677
Vvi4g1177 207 Pfam SBP domain 85 158 IPR004333 GO:0003677
Vvi4g1177 207 MobiDBLite consensus disorder prediction 1 16 - -
Vvi4g1177 207 Gene3D - 77 146 IPR036893 GO:0003677|GO:0005634
Vvi4g1177 207 SUPERFAMILY SBT domain 83 163 IPR036893 GO:0003677|GO:0005634
Vvi4g1177 207 MobiDBLite consensus disorder prediction 1 60 - -
Vvi4g1177 207 MobiDBLite consensus disorder prediction 155 174 - -
Vvi4g1177 207 MobiDBLite consensus disorder prediction 148 207 - -
Vvi4g1177 207 Coils Coil 207 207 - -
Vvi4g1177 207 Coils Coil 42 69 - -
Vvi4g1177 207 ProSiteProfiles Zinc finger SBP-type profile. 82 159 IPR004333 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1177 - - - vvi:100257602 351.673
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1177 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002321 3 3 0 1 2 2 3 2 2 2 2 2 3 2 2 1 2 4 1 2 2 2 2 2 1 2 2 4 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14710 PF03110 SBP 4.60E-31 No_clan Vvi TF