Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g118 ATGGAGGAGATGTCTCCGGCGGTTGCTGTGCCATTTAGATTAGGTAATTCAGTCTGTGATAACCCAACTGTAGCTAGCCATATGGATGTCACAAGATTTAAGCTCATGACGGATGCAACGAGCTTGTTATCTGATTCTGCAACCCAGGTTTCTACTGAGTCTATTGCTGCTGCTTTGTTGGATATGGTATCTGAAAATAAGAGCAATTGGGTTGCTGGTGATGATGTTGTAATCCGGGAAAGCGAGGAGGATGATTTCTTATCAACTAGTAGCATATGTGGTGAGGATTTGTTAGCATTCGAGGCTAATTTTGAGACAGGAACGCCGGGTTCTTTAGATATTGAGAAGGACGGTTGCAATGATCCGATTATTGCTAAGTCATCTCATTTGGGGGAATTGAATGCTGAGCAGGAGATTGTGAGTGATTCCCTTGCAGTGACCAGTCTTGAGGAAGAAATTGGATTTAGACCTGAACTGAAATCATCTGAAGTTGTTATTCAGTTGCCTGTGGAAAAAGGGGTAAGTGGAACACTTGTTCGTAGTGTGTTTGAGTTGGTTTATGTGCCCCTTTGGGGATTTACGTCTATCTGTGGAAGGAGACCTGAGATGGAAGATGCAGTTGCAACCGTGCCTCGGTTTTTTCAGATCCCTATTCAAATGCTAATTGGCGATCGAGTAATTGATGGCATGAGCAAGTGTGTCAGTCATTTAACGGCCCATTTCTTCGGGGTTTATGACGGTCATGGAGGGTCTCAGGTTGCAAACTATTGTCGCGATCGCATCCATTCTGCTTTGGCCGAGGAAATAGAGACTGCCAAGACAGGATTTAGTGATGGAAATGTTCAGGATTATTGCAAAGAGCTGTGGACCAAAGTGTTCAAAAATTGTTTTCTTAAGGTTGATGCTGAGGTTGGAGGAAAGGCTAGTCTTGAACCTGTTGCTCCAGAAACCGTTGGTTCTACTGCTGTTGTTGCCATTATTTGTTCATCCCATATCATTGTGGCAAATTGTGGTGATTCAAGGGCAGTCCTGTACCGTGGTAAAGAACCTATAGCTTTATCGGTCGATCATAAGCCAAATCGAGAAGATGAATATGCAAGGATTGAGGCAGCTGGAGGCAAAGTCATACAGTGGAATGGGCATCGAGTTTTTGGTGTTCTTGCAATGTCAAGGTCTATTGGTGATAGGTATTTGAAACCGTGGATTATACCTGAACCAGAGGTGACATTTATTCCTCGGGCAAGAGAAGATGAATGCCTCGTTCTAGCAAGTGATGGGCTATGGGACGTGATGACGAATGAGGAGGTATGTGATATAGCCCGAAGAAGAATACTCCTCTGGCACAAAAAGAATGGTGTGACGATGCTCCCCTCAGAAAGAGGCCAGGGGATCGACCCTGCAGCTCAAGCAGCAGCAGAGTGCCTCTCAAACCGGGCTCTTCAGAAGGGAAGCAAGGACAACATCACAGTGATTGTGGTGGATTTGAAGGCTCAGAGGAAGTTCAAGAGCAAAACCTGA 1518 44.99 MEEMSPAVAVPFRLGNSVCDNPTVASHMDVTRFKLMTDATSLLSDSATQVSTESIAAALLDMVSENKSNWVAGDDVVIRESEEDDFLSTSSICGEDLLAFEANFETGTPGSLDIEKDGCNDPIIAKSSHLGELNAEQEIVSDSLAVTSLEEEIGFRPELKSSEVVIQLPVEKGVSGTLVRSVFELVYVPLWGFTSICGRRPEMEDAVATVPRFFQIPIQMLIGDRVIDGMSKCVSHLTAHFFGVYDGHGGSQVANYCRDRIHSALAEEIETAKTGFSDGNVQDYCKELWTKVFKNCFLKVDAEVGGKASLEPVAPETVGSTAVVAIICSSHIIVANCGDSRAVLYRGKEPIALSVDHKPNREDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVTFIPRAREDECLVLASDGLWDVMTNEEVCDIARRRILLWHKKNGVTMLPSERGQGIDPAAQAAAECLSNRALQKGSKDNITVIVVDLKAQRKFKSKT* 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1179165 1183181 + Vvi4g118 Vvi4g118 784897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g118 505 PANTHER ALPHABET, ISOFORM E-RELATED 92 505 - -
Vvi4g118 505 CDD PP2Cc 192 495 IPR001932 -
Vvi4g118 505 Gene3D - 177 505 IPR036457 -
Vvi4g118 505 ProSitePatterns PPM-type phosphatase domain signature. 241 249 IPR000222 GO:0043169
Vvi4g118 505 PANTHER PROTEIN PHOSPHATASE 2C 6-RELATED 92 505 - -
Vvi4g118 505 Pfam Protein phosphatase 2C 227 488 IPR001932 -
Vvi4g118 505 SUPERFAMILY PP2C-like 180 496 IPR036457 -
Vvi4g118 505 ProSiteProfiles PPM-type phosphatase domain profile. 190 495 IPR001932 -
Vvi4g118 505 SMART PP2C_4 180 493 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g118 Vvi11g141 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g118 K14497 - vvi:100242262 981.474