Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1180 ATGGAACTCAATCTTCAGAATGAATACTTAAAGTCTCAGTTTGAGGGCTTGCAGGCTTTTCATTCAGAATCTGATGGGTCTCACCAGCAAACAAGAGAAACAGTGCAGGAAGGTGCAGCATCTGTAGATGTGAAAGGGCTCCATGAAAAGATAGAATCTTTGAGTAGTGAACTTTTTGAAGAAAAACAAACTCGAGTTGCTGCAGAGGAGGCTCTTAAGCATCTTCGAGCAGCTCACTCAGCAGCAGATGCAAAAGCTCAAGAGCTTTCCACCAAGCTTGCCGAAGCTCAACAGAAGATGGAACAAGAAATAAAAGAGCGTGATGAGAAGTACTCTGAACTTGACTCCAAGTTTAGCAGGCTTCACAAACGAGCAAAACAACGAATCCAAGATGTTCAAAAGGAAAAAGACGATCTTGAAGCCCGTCTTCGTGACATGAATGAAACAACTGAACGAGCATCATCCCAACAGTCTTCTTTGCAGCAGGAGCTCGAGCGCACACGACAACAAGCAAATGATGCATTGAGAGCCATAGATGCAGAGAGGCAACAATTACGAAGTGAAAACAATAAACTTCGAGACAAAATTGATGAATTGCGCCGTTCATTTGAACCCAAAGAGAATGCCATTGAGACCTTGCAACAGTCACTTATGGAGAAAGATCAGATGTTGGAAGACATGAAAGGGTTATTACAAGCTGCAGAAGAAAAAAGGCAAGCTTCAATAGCTGAGCTTTCTGCTAAACACCAGAAGACAGTAGAGAGTTTGGAAGCTCAACTTGCTGATGCAGTATCTGAAAGAACCAAAGCAACTGAAACGATTTCTTCTCTACAGGTGCTAATTGCTGAGAAAGAGTCAAAGATTGCAGAGATGGATGCAGCTTCAAGCGGTGAAGCAGCACGACTTAGAGCTGCCATGGAAACCGTAAAAGGGGAGCTTGTTCACCTGAAGCATGAGCATGAGAAAGAAAAAGAGAGTTGGGAAGCTGCCTCCCAGGCACTGAAAACAAAACTGGAGTTTGCTGAAAGTAACTGCATACGAGCTGAAATTGAAGCAGCAAAGATCAGAAGTCAGCTGGAATTAGAATTGTCTGTTCAAACCCAGCTGCTAAGTACAAGAGATGCTGAATTAATGGCTTCCAAGGAGGAGATTAAGCGTCTAGAAAGTGAGTTTTCTTCATACAAGGTCCGTGCTCATGCACTTCTCCAAAAGAAGGAAGCAGAGCTTGCTGCAGCAAAGGACTCTGAACAACTCAAAGCTCAAGAAGAAGCTCTAAAAGAGGCTGAAAAAGAAATACTGTTGGCAACAGAAGAAAGGGACAGGATTCTTCGAGATCTTCAGGATGCTTTGGCTAATCATGATAAAGAACTTGCAACAAGAGATGCGGCTCTTAGTAGTGCCAAGCAGCAGATTAAGAGCATAGAAAAGAAGCTTGATTCTGCTAACGCCAGATATCAATCAGAGAAAGAAGCATGGGAGATAAACCTTCAGAATTTGGAAGAAACTTGGCGATTGAGGTGCGAAGCATTGGCTGCTCAAAACGAAGTGTCTTCCGGACAAGAACTACAGAAAGAGTTAGAAGAGCTTAATCTACAGTATAAAAGATTGAAGGCAGAGCATGAATCATTCCGTGATCTGGCTGAAAGAATGATTGAAGGGAAAGACAACGAGATATCTAAACTTTTAGATGAGAATAAGACTCTTCAACAATCTCTAGAATCAAGACCAGCTGCTTACCACAATGACAATTACAACACAGCCTTCCACAAACAGGAAGCACTGAACTCAAGCACCTCTGCAGCAGAACAGCAGATTCTGCTTTTGGCAAGGCAACAGGCTCAGAGAGAGGAAGAGCTAGCACAGTCACAAAGACACATTCTAGCACTTCAAGAGGAAATTGAGGAGCTTGAACGTGAAAATCGTCTCCACAGTCAGCAGGAAGCCATGTTAAAGGAAGAATTCCGGAACATGGAAAGAACGCAGAAGAGGGAAGGTGTAGATATGACATATTTGAAAAATGTTATCTTAAAGCTTCTTGAGACAGGAGAAGTGGAGGCTCTGCTACCTGTGATTGGAATGCTTCTTCAATTCAGTCCTGAGGAGATGCAAAAGTGCCATCAAGCATACCACTCCTCAACGGAAGTTCCTCCCACTCCTGCAAGTGATGCTCCAGGATCTGCCCATTCTCTCTTCTCAAGATTCTCATTTTCATAA 2214 43.09 MELNLQNEYLKSQFEGLQAFHSESDGSHQQTRETVQEGAASVDVKGLHEKIESLSSELFEEKQTRVAAEEALKHLRAAHSAADAKAQELSTKLAEAQQKMEQEIKERDEKYSELDSKFSRLHKRAKQRIQDVQKEKDDLEARLRDMNETTERASSQQSSLQQELERTRQQANDALRAIDAERQQLRSENNKLRDKIDELRRSFEPKENAIETLQQSLMEKDQMLEDMKGLLQAAEEKRQASIAELSAKHQKTVESLEAQLADAVSERTKATETISSLQVLIAEKESKIAEMDAASSGEAARLRAAMETVKGELVHLKHEHEKEKESWEAASQALKTKLEFAESNCIRAEIEAAKIRSQLELELSVQTQLLSTRDAELMASKEEIKRLESEFSSYKVRAHALLQKKEAELAAAKDSEQLKAQEEALKEAEKEILLATEERDRILRDLQDALANHDKELATRDAALSSAKQQIKSIEKKLDSANARYQSEKEAWEINLQNLEETWRLRCEALAAQNEVSSGQELQKELEELNLQYKRLKAEHESFRDLAERMIEGKDNEISKLLDENKTLQQSLESRPAAYHNDNYNTAFHKQEALNSSTSAAEQQILLLARQQAQREEELAQSQRHILALQEEIEELERENRLHSQQEAMLKEEFRNMERTQKREGVDMTYLKNVILKLLETGEVEALLPVIGMLLQFSPEEMQKCHQAYHSSTEVPPTPASDAPGSAHSLFSRFSFS* 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20563524 20579978 + Vvi4g1180 Vvi4g1180 785959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1180 737 PANTHER CROSSOVER SUPPRESSOR ON 3 OF GOWEN 2 714 - -
Vvi4g1180 737 Pfam GRIP domain 665 704 IPR000237 -
Vvi4g1180 737 Coils Coil 217 244 - -
Vvi4g1180 737 Coils Coil 512 571 - -
Vvi4g1180 737 Coils Coil 246 273 - -
Vvi4g1180 737 SMART 1grip 664 708 IPR000237 -
Vvi4g1180 737 MobiDBLite consensus disorder prediction 150 168 - -
Vvi4g1180 737 Coils Coil 370 445 - -
Vvi4g1180 737 Coils Coil 612 653 - -
Vvi4g1180 737 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 2 714 - -
Vvi4g1180 737 ProSiteProfiles GRIP domain profile. 661 708 IPR000237 -
Vvi4g1180 737 Coils Coil 122 202 - -
Vvi4g1180 737 Coils Coil 79 117 - -
Vvi4g1180 737 Coils Coil 299 358 - -
Vvi4g1180 737 MobiDBLite consensus disorder prediction 147 169 - -
Vvi4g1180 737 Coils Coil 464 502 - -
Vvi4g1180 737 Gene3D - 118 258 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1180 - - - vvi:100266353 1269.99
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1180 Blo04g00866 . . . Bpe15g00495 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0888 Cone12ag0858 . . . . . . . . . . . . . . . . . Cma16g01265 . . . . . . . . . . . . . . . . . . . Lsi07g01066 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007597 1 2 1 0 1 1 3 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 2 1 36