Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1184 ATGTATGAAACTGTTCAAGAGCCATTTCTGAATGCAACTACAATGTCTGGGGACAGTGGAAGTGATTTAGGATCGAACCCTTTTGCAGCTCTTTTAGGGACCCAAGGTGGGGTTCAGGCCCATGATCGATCTGCTAATCCTCCAACCGCTGGTTCTGATACAACAAATAATTCTCCTGCTCCAAATACAAACCCTCTTCCCAACCCTTGGACCCCAGGTGGTGGTGGTGCTGGAGGTGCCCAAACAAACACCACTACAAGGTCAAATCCTGTGGGTGATGCTAGGACTCCAACACCCAGTGGATTGGGTGGACTTGGTCTCCCAGAGCTTGAGAGCATGTTTGGCTCCATGCCAGATACTAATTCACTGAATCAGATTATGCAAAATCCTGCTATATCACAGATGATGCAGAGCCTCCTTTCCAGTCCTCAGTATATGAACCAGATACTTGGTCTCAATCCCCAGTTGCGTAGCGTTCTTGATTCCAATCCTCAACTAAGAGAAATGATGCAAAATCCAGAATTTCTTCGTCAGTTGACTTCACCAGAGACAATGCAGCAATTTTTGACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCAACAATCAAGCCAGGAATCAGGTCAGACTGGTGGTGGCACAGGAGGAATGCTTAACAATATGGGGTTAGAGATGTTGATGAACATGTTTGGTGGACTCGGGGCTGGCAGTATGAATATTCCCAGCAGATCTGATGTACCACCGGAACAATTGTATGCTACTCAGCTGTCGCAGCTTCAAGAAATGGGTTTCTTTGACACACAGGAGAATATACGGGCTCTGACTGCCACTGCAGGGAATGTCCATGCTGCAGTGGAGCGGCTATTGGGGAACCCTGGTCAGTAG 888 47.52 MYETVQEPFLNATTMSGDSGSDLGSNPFAALLGTQGGVQAHDRSANPPTAGSDTTNNSPAPNTNPLPNPWTPGGGGAGGAQTNTTTRSNPVGDARTPTPSGLGGLGLPELESMFGSMPDTNSLNQIMQNPAISQMMQSLLSSPQYMNQILGLNPQLRSVLDSNPQLREMMQNPEFLRQLTSPETMQQFLTLQQSLLSQLGRQQSSQESGQTGGGTGGMLNNMGLEMLMNMFGGLGAGSMNIPSRSDVPPEQLYATQLSQLQEMGFFDTQENIRALTATAGNVHAAVERLLGNPGQ* 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20612271 20621048 + Vvi4g1184 Vvi4g1184 785963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1184 295 MobiDBLite consensus disorder prediction 1 104 - -
Vvi4g1184 295 MobiDBLite consensus disorder prediction 7 23 - -
Vvi4g1184 295 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 247 292 IPR015940 -
Vvi4g1184 295 SUPERFAMILY UBA-like 249 291 IPR009060 GO:0005515
Vvi4g1184 295 Gene3D - 235 295 - -
Vvi4g1184 295 MobiDBLite consensus disorder prediction 77 95 - -
Vvi4g1184 295 PANTHER UBIQUILIN 1 295 - -
Vvi4g1184 295 SMART uba_6 253 291 IPR015940 -
Vvi4g1184 295 Pfam UBA/TS-N domain 253 289 IPR015940 -
Vvi4g1184 295 MobiDBLite consensus disorder prediction 199 217 - -
Vvi4g1184 295 CDD UBA_PLICs 253 291 - -
Vvi4g1184 295 SMART CBM 153 188 IPR006636 -
Vvi4g1184 295 SMART CBM 107 149 IPR006636 -
Vvi4g1184 295 MobiDBLite consensus disorder prediction 39 61 - -
Vvi4g1184 295 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 1 295 - -
Vvi4g1184 295 MobiDBLite consensus disorder prediction 199 219 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1184 K04523 UBQLN, DSK2; ubiquilin - vvi:100250759 433.721
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1184 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0890 Cone12ag0861 . . . . . . . . . . . . . . . . . Cma16g01271 . . . . . . . . . . . . . . . . . . . Lsi07g01060 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0022376 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 3