Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1186 ATGGATCCTTACAAGTATCGTCCTTCAAGCGCCTATAATTCTCCTTACTTCACCACAAATGCTGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTCAAAGAGAACGCATTCCAGAACGTGTGGTCCATGCTAGAGGAGCTAGTGCTAAAGGGTTTTTTGAGGTCACTCACGATGTCTCTGACCTCACATGTGCTGATTTCCTTCGTGCCCCTGGAGTGCAGACTCCAGTTATTGTTAGGTTTTCCACTGTTATCCACGAGCGTGGCAGCCCTGAGACCATAAGGGACCCTCGAGGTTTTGCTGTGAAGTTCTATACTAGAGAGGGCAATTTTGATATGGTGGGAAACAATTTCCCAGTCTTCTTTATTCGTGATGCAATGAAGTTCCCTGATCACATTTGCCTTCCTCTTCGATGA 483 45.96 MDPYKYRPSSAYNSPYFTTNAGAPVYNNDSSLTVGSRGPVLLEDYHLVEKLANFQRERIPERVVHARGASAKGFFEVTHDVSDLTCADFLRAPGVQTPVIVRFSTVIHERGSPETIRDPRGFAVKFYTREGNFDMVGNNFPVFFIRDAMKFPDHICLPLR* 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20659902 20663897 + Vvi4g1186 Vvi4g1186 785965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1186 160 ProSiteProfiles catalase family profile. 14 160 IPR018028 GO:0004096|GO:0006979|GO:0020037
Vvi4g1186 160 ProSitePatterns Catalase proximal active site signature. 54 70 IPR024708 GO:0004096
Vvi4g1186 160 PANTHER CATALASE 2 155 IPR018028 GO:0004096|GO:0006979|GO:0020037
Vvi4g1186 160 SUPERFAMILY Heme-dependent catalase-like 12 155 IPR020835 GO:0020037
Vvi4g1186 160 SMART Catalase_2 18 160 IPR011614 GO:0004096|GO:0020037
Vvi4g1186 160 PRINTS Catalase signature 31 54 IPR018028 GO:0004096|GO:0006979|GO:0020037
Vvi4g1186 160 PRINTS Catalase signature 94 112 IPR018028 GO:0004096|GO:0006979|GO:0020037
Vvi4g1186 160 PRINTS Catalase signature 115 132 IPR018028 GO:0004096|GO:0006979|GO:0020037
Vvi4g1186 160 PRINTS Catalase signature 134 152 IPR018028 GO:0004096|GO:0006979|GO:0020037
Vvi4g1186 160 Pfam Catalase 18 155 IPR011614 GO:0004096|GO:0020037
Vvi4g1186 160 PANTHER CATALASE 2 155 - -
Vvi4g1186 160 Gene3D Catalase core domain 4 157 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1186 K03781 katE, CAT, catB, srpA; catalase [EC:1.11.1.6] - vvi:100232861 317.775
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1186 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031659 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1