Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1189 ATGGGTAATTGCTGTGGATCTCCTTCAACTGAGCCTACCCCCAGCTTCCCCGGAACCTCCACCCAAGTTAACGAAGTCCCGTCTTCTAAATTTTCAGTCTCAGGGACATCAGATAATACAAGCAACGACGGAGGACTTTCGATAACGAGCAGCAGCGCCGGAAACGGTCGGCTATCGGCGGCACCGGCGAGTGAAAGCCATGACGAGGCATTTCCGGAGGGGCAAATCTTACCAACACCCAATTTGAAAATTTTCAGCTTTGCCGATTTGAAGACTGCCACTCGAAATTTCAAGTCTGATAATGTGCTTGGCATAGGAGGTTTCGGAACTGTTTTCAAGGGCAGTGTTGATGAGAAGACCTTAGCCCCATGTAAGGCAGGCACGGGCATGGTGGTGGCTATCAAGAAATTGAATCCAGAGAGTCTGCAAGGCTTCCAAGAATGGCAGTCCGAGGTGAATTTCCTAGGAAGGCTTTCTCATCCTAACCTGGTTAAGCTGTTGGGATACTGTTGGGATGATAAAGAGCTGCTTCTTGTGTATGAATTTATGCAGAAGGGAAGCTTGGAGAACCATCTTTTCAGAAGAAATCCTTCCATTGAACCACTTTCTTGGCAACTACGGCTCAAAATAGCCATTGGTGCTGCCAGGGGGCTGGCTTTTTTGCATACCTCAGATAAGCAAGTCATTTACAGAGATTTCAAGGCCTCTAATATACTGCTTGATGGGGAGTACAATGCAAAAATATCAGATTTTGGCTTGGCAAAATTGGGACCTTCTGGTGGAGAGTCTCATGTGACAACCCGGGTGATGGGCACATATGGTTATGCTGCTCCAGAATATATTGCAACAGGTCATTTATATGTGAAGAGTGACGTGTATGGCTTCCGTGTTGTGCTANNNNNNNNNNNNNNNNNNNNNCCATTTGAATATAATTTTAGAATTGTTTAG 948 45.04 MGNCCGSPSTEPTPSFPGTSTQVNEVPSSKFSVSGTSDNTSNDGGLSITSSSAGNGRLSAAPASESHDEAFPEGQILPTPNLKIFSFADLKTATRNFKSDNVLGIGGFGTVFKGSVDEKTLAPCKAGTGMVVAIKKLNPESLQGFQEWQSEVNFLGRLSHPNLVKLLGYCWDDKELLLVYEFMQKGSLENHLFRRNPSIEPLSWQLRLKIAIGAARGLAFLHTSDKQVIYRDFKASNILLDGEYNAKISDFGLAKLGPSGGESHVTTRVMGTYGYAAPEYIATGHLYVKSDVYGFRVVLXXXXXXXPFEYNFRIV* 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20725982 20733193 - Vvi4g1189 Vvi4g1189 785968

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1189 315 PANTHER OS02G0670100 PROTEIN 48 300 - -
Vvi4g1189 315 Gene3D Phosphorylase Kinase; domain 1 69 182 - -
Vvi4g1189 315 PANTHER OS01G0588500 PROTEIN-RELATED 48 300 - -
Vvi4g1189 315 MobiDBLite consensus disorder prediction 1 75 - -
Vvi4g1189 315 Gene3D Transferase(Phosphotransferase) domain 1 183 312 - -
Vvi4g1189 315 ProSiteProfiles Protein kinase domain profile. 97 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1189 315 SUPERFAMILY Protein kinase-like (PK-like) 75 300 IPR011009 -
Vvi4g1189 315 Pfam Protein tyrosine and serine/threonine kinase 99 299 IPR001245 GO:0004672|GO:0006468
Vvi4g1189 315 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Vvi4g1189 315 ProSitePatterns Protein kinases ATP-binding region signature. 103 136 IPR017441 GO:0005524
Vvi4g1189 315 MobiDBLite consensus disorder prediction 1 59 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1189 - - - vvi:100241940 600.897
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1189 Vvi18g92 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1189 Blo04g00863 . . . Bpe15g00497 Bpe13g00391 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0892 . Cone6ag1697 Cone9ag1621 . . . . . . . . . . Bma03g00931 Bma06g00077 . . . Cma16g01278 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003844 1 1 1 2 2 0 2 0 0 2 1 0 2 2 0 2 0 0 2 0 2 0 0 0 0 1 0 0 0 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76593 PF07714 PK_Tyr_Ser-Thr 4.60E-39 CL0016 Vvi PK