Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi4g1190	ATGAAGAAAAAGAGGGCAGCAAGTGAAGATGTAGCTAAAATTGCTTTAGAGGATCTTGTCAAGTACTTTGATGTTCCAATGGTGGAAGCATCAAGGAATTTGAAAATTGGACTAACAGTGCTCAAGAGGAAGTGCAGAGAATTTGGCATTCCTCGTTGGCCACATAGAAAAATTAAATCCCTCGACGGTCTCATTCGTGATCTCCAGGAAGAGGCAGAACGACAACAGCTGGAGAACAAGGCTGCAGCCATGGCCGTGCTAAAGAGGCAAAGGATGTTGGAGACTGAAAAGGAATGTATAGAGCAGAGACCCTTCATGGAGATAGAGGATGAGACCAAGAGATTCAGGCAAGATGTCTTTAAGAGAAGGCACAGAGCTAGAGCCCTTAAGAACCGGGATTGTTTCATGTTTAAGCAAGCAATAATCTGTTCATGGTTACTATCCTTTTACCTTTTCACTTTTTCCAAGACACTTCAGGAATAA	483	42.65	MKKKRAASEDVAKIALEDLVKYFDVPMVEASRNLKIGLTVLKRKCREFGIPRWPHRKIKSLDGLIRDLQEEAERQQLENKAAAMAVLKRQRMLETEKECIEQRPFMEIEDETKRFRQDVFKRRHRARALKNRDCFMFKQAIICSWLLSFYLFTFSKTLQE*	161

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
4	20738355	20739576	-	Vvi4g1190	Vvi4g1190	785969

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi4g1190	160	ProSiteProfiles	RWP-RK domain profile.	1	81	IPR003035	-
	Vvi4g1190	160	PANTHER	PROTEIN RKD4	2	131	IPR044607	GO:0003700
	Vvi4g1190	160	Coils	Coil	58	85	-	-
	Vvi4g1190	160	Pfam	RWP-RK domain	14	61	IPR003035	-
	Vvi4g1190	160	PANTHER	PROTEIN RKD5	2	131	-	-

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	14711	PF02042	RWP-RK	5.90E-21	No_clan	Vvi	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi4g1190	-		-	vvi:109122426	261.536