Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1190 ATGAAGAAAAAGAGGGCAGCAAGTGAAGATGTAGCTAAAATTGCTTTAGAGGATCTTGTCAAGTACTTTGATGTTCCAATGGTGGAAGCATCAAGGAATTTGAAAATTGGACTAACAGTGCTCAAGAGGAAGTGCAGAGAATTTGGCATTCCTCGTTGGCCACATAGAAAAATTAAATCCCTCGACGGTCTCATTCGTGATCTCCAGGAAGAGGCAGAACGACAACAGCTGGAGAACAAGGCTGCAGCCATGGCCGTGCTAAAGAGGCAAAGGATGTTGGAGACTGAAAAGGAATGTATAGAGCAGAGACCCTTCATGGAGATAGAGGATGAGACCAAGAGATTCAGGCAAGATGTCTTTAAGAGAAGGCACAGAGCTAGAGCCCTTAAGAACCGGGATTGTTTCATGTTTAAGCAAGCAATAATCTGTTCATGGTTACTATCCTTTTACCTTTTCACTTTTTCCAAGACACTTCAGGAATAA 483 42.65 MKKKRAASEDVAKIALEDLVKYFDVPMVEASRNLKIGLTVLKRKCREFGIPRWPHRKIKSLDGLIRDLQEEAERQQLENKAAAMAVLKRQRMLETEKECIEQRPFMEIEDETKRFRQDVFKRRHRARALKNRDCFMFKQAIICSWLLSFYLFTFSKTLQE* 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20738355 20739576 - Vvi4g1190 Vvi4g1190 785969

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1190 160 ProSiteProfiles RWP-RK domain profile. 1 81 IPR003035 -
Vvi4g1190 160 PANTHER PROTEIN RKD4 2 131 IPR044607 GO:0003700
Vvi4g1190 160 Coils Coil 58 85 - -
Vvi4g1190 160 Pfam RWP-RK domain 14 61 IPR003035 -
Vvi4g1190 160 PANTHER PROTEIN RKD5 2 131 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1190 - - - vvi:109122426 261.536
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1190 . . . . . . . . . . Cma03g00624 . Car03g00579 . . . . . . . . . . . . . . . . . . Cone8ag0893 Cone12ag0864 . . . . . . . . . . . . . . . Cmo03g00652 . . . . . . . . . . . . . . . . . . . . . . Csa06g03401 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi17g557 . 73 209 AtRKD Transcription Factor Family AT1G18790 62.9 1.9e-37 153.3
Vvi17g557 . 80 242 AtRKD Transcription Factor Family AT1G74480 53.3 2.1e-37 153.3
Vvi4g1190 . 2 136 AtRKD Transcription Factor Family AT4G35590 69.1 8.1e-43 171.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013768 0 4 0 0 0 1 1 1 1 1 0 1 1 1 1 0 1 2 0 1 1 1 1 1 0 1 1 1 0 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14711 PF02042 RWP-RK 5.90E-21 No_clan Vvi TF