Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1191 ATGGACGAAACGCCGTCGTATCCTCCCATCGAGCCCACTGATTTCGATCTCATCGTCGTAGGAACCGGACTTCCCCAATCCGTCATCGCGGCCGCCGCTTCCTCTGCCGGTAAATCAGTCCTCCATCTTGACAGCAACTCATTCTATGGCAGCCACTTCTCCTCTCTCAATCTCGACGAGTTCTCATCGTTCCTCACTTCTCAATCCGCCGTACACTCCTCTCATCCCAACCCTCCATCTTCCGTCGCCGCAGATGCCGCCGAGTATGTCGCCCTGGATCTCAAGACACGTCCTATGTATTCTGACGTCGAAATCACTTCCCACAGTTCGGATCCTGTCGAGCATTCCAGAAAGTTCAACCTAGATGTGTCGGGACCTAGGGTATTGTTCTGCGCCGATGCAGCCGTCGACCTCATGTTGAAATCCGGCGCAAGCCAGTATTTAGAATTCAAGAGCATCGATGCGAGTTTTGTGTGCGATGCAGATGGCCGGTTCTCGACCGTGCCCGATTCAAGAGCTGCGATATTCAAAGATCGGAGTCTCTCGCTGACGGAGAAGAATCAGTTAATGAGGTTCTTCAAGCTTATTCAGGGACACTTAGCTGCTTCAGATGAGGCTGAGAATGATTCGAATGCGAGGATCTCGGAGGACGATTTAGAGAGTCCCTTTGTTGAGTTTTTGAACAAAATGCGGTTGCCGCCCAAGATTAAATCGATGATCCTATATGCAATAGCCATGGCCGATTATGATCAAGACAGCATAGAGGTCTGTAAAGATGTACTCGACACAAAAATTGGCATTGATCGTTTGGCTCTTTACCACTCATCAGTTGGCAGGTTTCCAAATGCACTTGGGGCTCTAATATATCCTATTTATGGCCAAGGGGAACTTACACAAGCCTTTTGTCGCCGTGCTGCTGTTAAGGGTTGCATATATGTTTTGCGAATGCCAGTGATTGCTCTGCTTATGGAAAAGGAAAGCGGGCATTGTAAAGGTGTCAGACTGGCTTCTGGTCAGGATATATTCAGCCAAAAGTTATTGGTGGATCCATCCTTCATAGTACCAGTGCCGGTTGCTCCTTCTCAACCTGATTGTATGCCAGAAAGTTCTCAAGTTATCAATCTGGTAGATGCTAAACAGAAGGTGGCTAGGGGAATATGCATTATGAAGAGTTCCTTAAAGCCAGATGTGTCGAACTTTGTGTTTGTGTATCCTCCTAGATCTTTGTACCCTGAGCAGGCCATGGCAATCCGAGCTGTCCAGATAGGTAGTAATTTAGGTGTTTGTCCGTCAGGCATGTTTGTGTTGTATCTTTCTACACTGTGTAATGATGCCACTCAGGGGAAGGAGTTACTGCAGGCAGCCATAAAGTCTCTTTTCACGCTGCCAGTTTCTGGAAATCCTGAAAATAGTTCTTCAGTTCACAGTGAGAACATGGAAGAAGTGAAACCCACATTACTTTGGAGTGCCTTGTATACTCAGGAGCTGGTTATGGGTTCATTTGAATCTATCAGCTCCACCTCCATGCCAGATGGGAATCTGAATTACAATGTTCTTTTAGATGCAACGGTAAAGCTATTTCACCAGATGTATCCCCAGGAAGAATTCTTTCCAGAGACAACCTCACCTGAGAATGTTGAGGATGATGACGGTCTTAGTCTAGAGTCCTAG 1671 47.04 MDETPSYPPIEPTDFDLIVVGTGLPQSVIAAAASSAGKSVLHLDSNSFYGSHFSSLNLDEFSSFLTSQSAVHSSHPNPPSSVAADAAEYVALDLKTRPMYSDVEITSHSSDPVEHSRKFNLDVSGPRVLFCADAAVDLMLKSGASQYLEFKSIDASFVCDADGRFSTVPDSRAAIFKDRSLSLTEKNQLMRFFKLIQGHLAASDEAENDSNARISEDDLESPFVEFLNKMRLPPKIKSMILYAIAMADYDQDSIEVCKDVLDTKIGIDRLALYHSSVGRFPNALGALIYPIYGQGELTQAFCRRAAVKGCIYVLRMPVIALLMEKESGHCKGVRLASGQDIFSQKLLVDPSFIVPVPVAPSQPDCMPESSQVINLVDAKQKVARGICIMKSSLKPDVSNFVFVYPPRSLYPEQAMAIRAVQIGSNLGVCPSGMFVLYLSTLCNDATQGKELLQAAIKSLFTLPVSGNPENSSSVHSENMEEVKPTLLWSALYTQELVMGSFESISSTSMPDGNLNYNVLLDATVKLFHQMYPQEEFFPETTSPENVEDDDGLSLES* 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20752322 20765631 - Vvi4g1191 Vvi4g1191 785970

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1191 556 SUPERFAMILY FAD-linked reductases, C-terminal domain 380 495 - -
Vvi4g1191 556 SUPERFAMILY FAD/NAD(P)-binding domain 12 355 IPR036188 -
Vvi4g1191 556 MobiDBLite consensus disorder prediction 537 556 - -
Vvi4g1191 556 Gene3D - 12 536 IPR036188 -
Vvi4g1191 556 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 168 286 - -
Vvi4g1191 556 PRINTS Rab GDI/REP protein family signature 16 34 IPR018203 GO:0005092|GO:0007264
Vvi4g1191 556 PRINTS Rab GDI/REP protein family signature 34 51 IPR018203 GO:0005092|GO:0007264
Vvi4g1191 556 PRINTS Rab GDI/REP protein family signature 135 151 IPR018203 GO:0005092|GO:0007264
Vvi4g1191 556 PRINTS Rab GDI/REP protein family signature 185 200 IPR018203 GO:0005092|GO:0007264
Vvi4g1191 556 PRINTS Rab GDI/REP protein family signature 293 314 IPR018203 GO:0005092|GO:0007264
Vvi4g1191 556 PANTHER RAB GDP-DISSOCIATION INHIBITOR 11 544 IPR018203 GO:0005092|GO:0007264
Vvi4g1191 556 PANTHER RAB PROTEINS GERANYLGERANYLTRANSFERASE COMPONENT A 11 544 - -
Vvi4g1191 556 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 92 496 - -
Vvi4g1191 556 Pfam GDP dissociation inhibitor 99 451 IPR018203 GO:0005092|GO:0007264
Vvi4g1191 556 Pfam GDP dissociation inhibitor 14 61 IPR018203 GO:0005092|GO:0007264
Vvi4g1191 556 MobiDBLite consensus disorder prediction 541 556 - -
Vvi4g1191 556 PIRSF Rab_ger_ger_transf_A_euk 1 111 IPR001738 GO:0005968|GO:0006886|GO:0018344
Vvi4g1191 556 PIRSF Rab_ger_ger_transf_A_euk 101 554 IPR001738 GO:0005968|GO:0006886|GO:0018344
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1191 K23460 CHM, CHML; Rab proteins geranylgeranyltransferase component A - vvi:100262556 1087.4
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1191 . . Bda04g00217 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0894 Cone12ag0865 . . . . . . Blo05g00677 . . . . Bpe06g00159 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008575 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 0 1 32