Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1192 ATGTACGGATCGAGAGGGGCAATGTTGGGAAGCGGGGGGGTTTCGGACGGGTACGAGATCGGCTCAAAGAGACAAAGAATGATGGAATCAAATCCCTACTTCGCAGTGAGCAGCAGTGCAAGTGGTTTCCAACCTTATGGCTATGGAAGCGGCTTTCAGCCTCCCACCTTTCCAGTGGTTCGTCTCAGGGGCCTTCCTTTCAACTGCACCGATATTGACATTTTCAAGTTCTTTGCTGGGCTAGACATAGTGGATGTGTTGCTGGTGAACAAGAGTGGGCGCTTCTCAGGAGAGGCTTATGTTGTCTTTGCGGGATCCATGCAGGCTGACTTTGCTTTGCAGAGGGATAGACAGAACATGGGACGCAGATATGTTGAAGTTTTTAGGTGCAAGAAGCAGGATTATTACCATGCTGTGGCTTCAGAGAGGTTCTCAGATAAGGACCAAATGGAGCACACTGAAATATTGAAGTTACGTGGTCTCCCCTTCTCTGTGAAGAAATCTCAAATTCTTGAATTTTTTGGAGACTTTGAGCTTGGAGATGATAAGGTACACATTGCATGTCGCCCAGATGGTAAGGCTACCGGAGAGGCTTATGTGGAGTTTGCTTCAGCAGAAGAGGCTAAGAAAGCTATGGGCAAGGACAAGATGACAATTGGATCACGGTATGTCGAGCTCTTCCCATCAACACCAGATGAGGCAAGACGAGCTGATTTTGGGGACAATGAAAACTTGTTTATTGGATTTCTTGCCTTAATTGGTTGTTTTACCGTTTAA 777 46.72 MYGSRGAMLGSGGVSDGYEIGSKRQRMMESNPYFAVSSSASGFQPYGYGSGFQPPTFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKSGRFSGEAYVVFAGSMQADFALQRDRQNMGRRYVEVFRCKKQDYYHAVASERFSDKDQMEHTEILKLRGLPFSVKKSQILEFFGDFELGDDKVHIACRPDGKATGEAYVEFASAEEAKKAMGKDKMTIGSRYVELFPSTPDEARRADFGDNENLFIGFLALIGCFTV* 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20771153 20773249 + Vvi4g1192 Vvi4g1192 785971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1192 258 SUPERFAMILY RNA-binding domain, RBD 147 236 IPR035979 GO:0003676
Vvi4g1192 258 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 144 238 - -
Vvi4g1192 258 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 142 - -
Vvi4g1192 258 SUPERFAMILY RNA-binding domain, RBD 48 137 IPR035979 GO:0003676
Vvi4g1192 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 224 IPR000504 GO:0003723
Vvi4g1192 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 61 123 IPR000504 GO:0003723
Vvi4g1192 258 Gene3D - 50 143 IPR012677 -
Vvi4g1192 258 Gene3D - 144 238 IPR012677 -
Vvi4g1192 258 CDD RRM_hnRNPH_ESRPs_RBM12_like 155 227 - -
Vvi4g1192 258 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED 144 238 - -
Vvi4g1192 258 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED 1 142 - -
Vvi4g1192 258 SMART rrm1_1 59 128 IPR000504 GO:0003723
Vvi4g1192 258 SMART rrm1_1 155 227 IPR000504 GO:0003723
Vvi4g1192 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 154 231 IPR000504 GO:0003723
Vvi4g1192 258 CDD RRM_hnRNPH_ESRPs_RBM12_like 59 128 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1192 K12898 HNRNPF_H; heterogeneous nuclear ribonucleoprotein F/H - vvi:100247294 468.774
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1192 . . . . . . . Bma15g00888 . . Cma03g00623 Cma07g00385 Car03g00578 Car07g00337 . Cpe19g00897 Cpe10g00714 . . . . . . . . . . . . . . . Cone12ag0866 . . Lsi01g00530 . . . . Blo06g00274 . . Bpe10g00194 . . . . . Cmo07g00378 . . . . . . . . . . . . . . . . . . . . . . Chy02g00506 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005883 2 2 1 1 2 1 2 1 1 1 0 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 1 39