Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1195 ATGAAGGGAGGTAAATCGAAGGCCGCTGAGGTGAAGAGAGCTGATAGCAAGCTTTCTGTGAAGAAGAAAGGTGCCGCTGCCGTCGGAAAAAAGACGGCTAAGAAGGAGAAGGCTGTAAAGGATCCAAACAAGCCGAAGAGGCCTGCTAGTGCCTTCTTCGTTTTCATGGAGGAGTTTAGGAAGCAGTACAAAGAAAAGCATCCAGCCAACAAATCTGTGTCTGTTGTCGGTAAAGCTGGTGGTGATAAATGGAAATCGTTGTCAGAAGCTGAGAAAGCGCCCTATGTAGCAAAGGCAGAGAAAAGGAAAACTGAATACAACAAGAGCATGCAGGCCTACAACAAGAGAATGGCTGAGGGACCGACTGCTGCTGAGGAGGAAGAGTCTGACAAATCTAGGTCTGAGGTGAACGACGACGAGGAAGACGAGGATGAGAGTGGAGAGGAAGAAGATGATGAAGAGTAG 465 48.17 MKGGKSKAAEVKRADSKLSVKKKGAAAVGKKTAKKEKAVKDPNKPKRPASAFFVFMEEFRKQYKEKHPANKSVSVVGKAGGDKWKSLSEAEKAPYVAKAEKRKTEYNKSMQAYNKRMAEGPTAAEEEESDKSRSEVNDDEEDEDESGEEEDDEE* 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20801266 20803199 + Vvi4g1195 Vvi4g1195 785974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1195 154 PANTHER HIGH MOBILITY GROUP B3-RELATED 1 153 - -
Vvi4g1195 154 Gene3D High mobility group box domain 28 130 IPR036910 -
Vvi4g1195 154 MobiDBLite consensus disorder prediction 1 20 - -
Vvi4g1195 154 MobiDBLite consensus disorder prediction 87 154 - -
Vvi4g1195 154 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 153 IPR031061 -
Vvi4g1195 154 Coils Coil 96 116 - -
Vvi4g1195 154 MobiDBLite consensus disorder prediction 29 44 - -
Vvi4g1195 154 Pfam HMG (high mobility group) box 45 114 IPR009071 -
Vvi4g1195 154 MobiDBLite consensus disorder prediction 132 154 - -
Vvi4g1195 154 CDD HMGB-UBF_HMG-box 45 111 - -
Vvi4g1195 154 SUPERFAMILY HMG-box 36 119 IPR036910 -
Vvi4g1195 154 MobiDBLite consensus disorder prediction 1 49 - -
Vvi4g1195 154 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 45 114 IPR009071 -
Vvi4g1195 154 MobiDBLite consensus disorder prediction 87 109 - -
Vvi4g1195 154 SMART hmgende2 44 115 IPR009071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1195 K25507 HMGBP; high mobility group B protein, plant - vvi:100257544 239.195
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1195 Vvi18g85 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1195 . . Bda04g00215 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0896 Cone12ag0868 . . . . . . Blo05g00676 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002005 3 3 2 2 2 0 4 1 0 2 2 1 3 2 2 3 0 5 2 1 2 2 2 2 2 2 2 2 1 2 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14712 PF00505 HMG_box 1.70E-21 CL0114 Vvi TR