Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1197 ATGTTCGTCAAGAAGCTTGTTGAGAAGGCTTCCAAGAAGCCTGGAGGAAGTTTGGATGGTTTGAAATCTCAAGATGTAGACCCACGCCTGGTTTTCCATTATGGAATTCCAGGGGGTTCTATCTTATTTGCTTATGATTCGATTCAGAAGATACTTGCAATTGCTACAAGAGATGGTCGAATTAAATTATTTGGCAAAGACAACACTCAAGCTCTACTTGAATCCAATGAGACAGTTCCAAGCAAGTTTTTACAGTTTATTGAGAACCAAGGCATTCTTCTAAATGTAACTGCTGAGAATCACATTGAGGCAAATTATATGTCAAGAGTCCTGATTGGGAATTATCAGGACACAGATAATGGGAACGTCTGGGACATAGACAAGAAGCTGTTGTCTCATGTGCATGTTTTTAAAGAAGAAATTACCTCTTTTATGGTCATGCAACGAAGTTTCTTCATGTATCTTGGAGACTCTTCTGGTAATATTTCTGTTTTGAAGCTTGAACAAGAACCATGTCATATGGTGCAAATGAAATACACTATACCTTCAACAGCCTCTCATGGGAATCCAACTGAAGTTGCAGGTGGCACTGCTGTAATGCATATTCTGCCCCAACCAACTGCTGAAAGTAAAAGGGTTCTTATAATATTTAGAGATGGTCTGATTGTGTTATGGGATATACGAGAAAGCAAGGTTATTTTCAAGACTGGTGTAAATATGTTGCAACCATTAAGTCATGACACAAAGACAGTAACTTCTGCATGCTGGGCGTGTCCTTTTGGAGGTAAAGTTGTGGTTGGTAATGGAGCAGCAGCAGATAAAGATTTATATTCTTCTCAAAGTGCTCCTATTTACAAACTCAATCTTGGATATAAGTTGGAAAAAATTCCTATAGCATCATTAAAATGGGCCTATGCAGATGGGAAGGCAACTCGACTATATGTTATGGGTGGCTCTGACATTCAATCCACAAACTTATTGCAGGTGATCTTATTGAATGAGCAGACTGAATCACGCACAATTAAATTGGGGATTCATCTGCCTGAGCCTTGTGTTGACATGGTGATCGTTTCAAGCTCCAGTGAGCAAAGCAAGCATAAACAAGATTCTTTCCTTCTTCTGGGAAAATCTGGTTGCATGTATGCCTACGATGATTATGTGATAGAAAAGTATCTCTTACAATGCCAATCAAGGTCCTCACCCTCCCTCCCAAAGGAGATAATGGTAAAGCTGCCTTTTTCTGATTCAAGCATCACTATAGCAAAATTCATCACAGAGAATCCAAATTTCTTAAATTCTTCTGATGAGGATTATGTTTCGCTGGCAAAAAGCATTCCACCATTTCTTCCATCTGAAGCAAAACCAAAAGATGAAACACGGTTGAACTCTACCAACTTTGGTGGATTTGCAAAGATTAAAAACTTGTACATTACAGGACACAGTAATGGAGCCATATATTTTTGGGATTTATCGTGTCCATTTTTGCTCCCAATCTTATCATTAAAACAACAGAGCGAGGATGACTTATCTTTAAGTGGTATAGCATTAACTGCATTGTATTTTGACGGCCATTCTCGCTATCTTATTTCTGGTGACCAAAATGGAATGGTTCGCATCTTCAAATTCAAAACTGAGGCGTATGCCACAGCCACCAGTTTTATGCCTCTGCAAGGAAGTACAAAGAAAGGAAGCAACCATATCATCCAGAGTGTCAAACTTATAAAGGTCAATGGTTCTGTGCTTTCTATAGACATAAGCCGTGGCTCAAGACATCTTGCAATTGGATCTGATCAAGGATATGTTTCACTAATTGATATGGAAAGTCCCTCTCTATTGTATCAAAAACTTATCGAAAGTGAATTGAGCACTGGTGTCATCTCCGTGTGGTTTGAAACCTGCATTCTGCATGGTTTTGAGAAGAATATTTTAGCGGTAGCAACAAAGGATTCATCAATTTTGGCTCTTGATAGTGACACTGGAAACACACTTAGTACCAGCATGATCCATCCCAAGAAACCCTCTAAAGCTCTATTCATGCAGATTTTGGATGGGCATGATGCATTTGGTAAAAGATCATATACATCAGAGAATTTGGACTTGAACAAAGGGAACTATATTGAGGATTCAAAGCAGTTGTCACTATTGCTATGTTCTGAGAAAGCTGCATATGTCTATTCCTTAACACATGTAATTCAGGGAATTAAGAAGGTACACTACAAGAAGAAGTTCAATTCCTCTTGTTGCTGCTGGGCATCAACATTCTACACTCCCTCTGATGCTGGGCTTGTACTCATTTTTACTAATGGAAAAATTGAAATAAGGTCCCTTCCAGAGTTATCCCTGTTAAAGGAAACTTCAATAAAAGGTCTTGCATTTTCAACTTCCAAATCAAACTCATTGTCAAACAGTTCAGTATGCTCTTCAAGGGATGGAGAAATTATTGTGGTGAATGGTGACCAGGAAATGTTTGCTCTCTCAAGTTTGCTTCAAAATGAAATTTATAGGCCTTTGGACTCAGCTCGCCAAGTCTACAGGAAAGATCTGGTGGTTTCACAAGAAGGGCTTATTTCTGGACCCCTTGTCCATAAGGAAAAGAAAAAGGGCATATTTAGCTCTGTTATTAAAGGCAGCAAAACAAAGCATGTGCCTGATATGGAAGCAGAAGATGCGAAAGAAAGTATTGAAGAACTTTCATCAATCTTTTCAGTTGCCAACTTCCCATTATATGCTGGGAAAGGAGACAATCTAGACATGGATGAAGAGGAGGTTGAATTAGATATAGATGATATTGACCTTGAAGATCCTGGCGAAAAGCCCAAGGGACAGAATATGATGGCAGCCCTAAATAAGCAGAAGCTCACAAGCAAATTTCAGGCTCTTAAAGGTAAATTAAAACATGTGAAGTTAAAAAATGAAAAAAGTTCCACGAAGGAAGAGCCACAAGATGAGAAGGCTGGTGCAGTTGATCAGATCAAGAAGAAATATGGGTTTCCTATATCTGGTGAATCAAGTGTCATTAAAATGGCAGAAAGCAAGCTGAACGAGAATTTGAAGAAGTTGCAGGGTATCAACATAAAAACGACAGAGATGCAGGACACGGCTAAATCATTTTCATTCATGGCAAAGCAGGTCCTGCGAGCTGAGCAAGATAAGCAAAGCTCATAA 3165 39.02 MFVKKLVEKASKKPGGSLDGLKSQDVDPRLVFHYGIPGGSILFAYDSIQKILAIATRDGRIKLFGKDNTQALLESNETVPSKFLQFIENQGILLNVTAENHIEANYMSRVLIGNYQDTDNGNVWDIDKKLLSHVHVFKEEITSFMVMQRSFFMYLGDSSGNISVLKLEQEPCHMVQMKYTIPSTASHGNPTEVAGGTAVMHILPQPTAESKRVLIIFRDGLIVLWDIRESKVIFKTGVNMLQPLSHDTKTVTSACWACPFGGKVVVGNGAAADKDLYSSQSAPIYKLNLGYKLEKIPIASLKWAYADGKATRLYVMGGSDIQSTNLLQVILLNEQTESRTIKLGIHLPEPCVDMVIVSSSSEQSKHKQDSFLLLGKSGCMYAYDDYVIEKYLLQCQSRSSPSLPKEIMVKLPFSDSSITIAKFITENPNFLNSSDEDYVSLAKSIPPFLPSEAKPKDETRLNSTNFGGFAKIKNLYITGHSNGAIYFWDLSCPFLLPILSLKQQSEDDLSLSGIALTALYFDGHSRYLISGDQNGMVRIFKFKTEAYATATSFMPLQGSTKKGSNHIIQSVKLIKVNGSVLSIDISRGSRHLAIGSDQGYVSLIDMESPSLLYQKLIESELSTGVISVWFETCILHGFEKNILAVATKDSSILALDSDTGNTLSTSMIHPKKPSKALFMQILDGHDAFGKRSYTSENLDLNKGNYIEDSKQLSLLLCSEKAAYVYSLTHVIQGIKKVHYKKKFNSSCCCWASTFYTPSDAGLVLIFTNGKIEIRSLPELSLLKETSIKGLAFSTSKSNSLSNSSVCSSRDGEIIVVNGDQEMFALSSLLQNEIYRPLDSARQVYRKDLVVSQEGLISGPLVHKEKKKGIFSSVIKGSKTKHVPDMEAEDAKESIEELSSIFSVANFPLYAGKGDNLDMDEEEVELDIDDIDLEDPGEKPKGQNMMAALNKQKLTSKFQALKGKLKHVKLKNEKSSTKEEPQDEKAGAVDQIKKKYGFPISGESSVIKMAESKLNENLKKLQGINIKTTEMQDTAKSFSFMAKQVLRAEQDKQSS* 1055
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20807988 20822529 - Vvi4g1197 Vvi4g1197 785976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1197 1054 MobiDBLite consensus disorder prediction 969 990 - -
Vvi4g1197 1054 Gene3D - 84 278 IPR015943 GO:0005515
Vvi4g1197 1054 CDD R-SNARE_STXBP5_6 990 1047 - -
Vvi4g1197 1054 Gene3D - 616 841 IPR015943 GO:0005515
Vvi4g1197 1054 PANTHER LETHAL 2 GIANT LARVAE PROTEIN 1 1053 - -
Vvi4g1197 1054 Gene3D - 454 615 IPR015943 GO:0005515
Vvi4g1197 1054 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 1053 - -
Vvi4g1197 1054 Pfam Lethal giant larvae(Lgl) like, C-terminal 730 833 IPR013905 -
Vvi4g1197 1054 SUPERFAMILY WD40 repeat-like 44 614 IPR036322 GO:0005515
Vvi4g1197 1054 SUPERFAMILY WD40 repeat-like 574 835 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1197 - - - vvi:100262676 1959.88
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1197 Blo04g00862 . . . Bpe15g00498 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0899 Cone12ag0870 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005820 1 5 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 39