Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1198 ATGGGAGGCCTATTTCATCTTTTTGATTTCAATCAAAGCAGCATGGCCAGAAAAGTTCTTGCACATAAGAGGCATGTGGGCGGCTTGGAAGCTCCTCGAAACAGCTTGGAGTTGCCAATAGAAACTTCTCAGGGCTATTATGCTGTAGGAGACAGTGTGCCGAACTCTTACCAAGTGCAACAGGACTGGGCAGGAAAGAACTGTCATCCAACTGAGGCTTCAATGAAGAAGTTGATCAATCAGGAGATGTCCAAACGATCAAACACCAGACACAACACACCAAGTATTGTGGCCCGGCTGATGGGAATGGACATGTTACCACTGGATACAAAATCGGTAGTTCAGCCAATTGAAAAAAGGAATGTAGCTGAAATCAATTTTTCAAAGAAGGGACGGGAACGGACTGAAAATGGCTCCATTGGCCATGCCCCTCTTAACCCAAATTCTTCCAGGCAGATGGAGCCTCGTGAACATCCACAGGAGGAGGAACTACAGAAGTTCAAGAAAGAGTTTGAAGCATGGCAAGCAGCCAGGTTTAGGGAATGTGCAAGTGTTCAGAAGGAATATTTTTCTTTAAGTAGATCCACAAGCAGAGACTTTGATCAGTCCCCCATGATGAATTGTGATAAGAAACTGGAAAAATCTTCTGCCCCCACAAGGATAGTGATCCTAAAGCCTGGTCCTGATAGGATTGGCAACACTGATGAGTCTTGGGCCAGTTCCTCAGGTACTTTAGAGGAGAGAGATAGCATAGAAGATTTTCTTGAGGAGGTGAAGGAAAGGTTGAAACATGAACTCCAAGGGAAAACTCGTAAGAGGGTTACATTGGTCAGAGGAGAAAGTGTTACCAGGGACCTTGGAATGAATTTGCTTCGATCGGAATCAACTAGATCATATAGAAGTGAAATTCAGTTAAATGGATCAGGTTCCCCAGAGTTCATCAACAGAGATACTAGGAAATTCTTGTCAGAGAGGTTGAGGAATGTTCTAAAGAGAGAAACACATCAGGATATCCCCATAGTTGTCAACGGCAGCTCAAGGCCGATGAACCACTGGGAGAATGTCAACAATGAAGCAGAAATGCAAACTAGATCTTTCAGACATGGGCCAGATGATGATGCAGTTATCCACAGAGAATCGTCTCCTAGGAACCTCATTAGATCTTTATCAGCCCCAGTATCTGGAACATCATTTGGGAAGCTCCTTCTAGAGGACCGCCGCATTTTAACTGGTGCTCATATAAGGAGGAAGCATGAAGTCACTGAAAACTTGTCAGTGGATGTGAAGAAAGGGAGCAAAGAAAAATTTAATCTAAAAGAAAAGGTTTCGAATTTCAAATATAGTTTCACATTTAGAGGGAGGTTATTTGGCAGAAAGATTCAGTCAGCAGTGGAATCATGTGGAATCGAACATGATCCCATGAAAGACATCATGAGCGGACCAACGGTTATTATGAATTTGGGTGACCGGCATGAGAACTCCACTGAGGTGCCTCCAAGCCCTGCATCAGTGTGCAGCAGTGCTCATGAAGAATTCTTCAGACCTGGTGATTATGTCAGTCCAGTATCAACACCGGATTTACCTTTGGTAGAAGATTACCCAGTACCACATCTTTTTAGGGAGATCAGCTCTAACCTTAATGAGCTTCGGAGGCAACTAGACCAACTTGGATCCAATGGGTCTGAGGACACAACAATTGACGAGGAACCACCAGAGGTTGAAATAATTGAATTGGAGGACCAGGCAGAGGCTTACATAAGAGATCTGCTTGTTGCTTCTGGTTTCTATGGTGGATCATCTGATACAGTTTTATCAAGATGGGACCCACTTGCAAGGCCTATCAGCAACCGGGTCTTTGACAAGGTGGAAGAGTCCTACAAAAAATTGGCTAAGGATAGCGAAGGGTCCCCAGAGGCTGACGGTGAGAAGAAGGTAGATCACAAAGTGTTACTTGATTTATTGAATGAAGCACTTTCGACTGTTCTTGGACCGCCCGTGGGCATGTCCAGATTCAGAAGAAAATTTATGGGTTCTACTATGTTGTCTGCTCCACATGGAAAGAAATTACTGGATTGTGTATGGGAGATTATCCGTGTGCATGTGTACCCTCCAGCTGACAAATCTTGTTACTCGCTTGATAGTATGGTGGCTAGGGATCTGGGTTCAATTCCCTGGTCCGGACTGATTGATGATGAGATGAATGCTCTGGGAAGAGATATGGAATCTATGATTATTGGAGGTCTGGTTGATGAAATTGTGAAGGATATGCTTCTGGGCTGGTGGACATCATAA 2292 44.15 MGGLFHLFDFNQSSMARKVLAHKRHVGGLEAPRNSLELPIETSQGYYAVGDSVPNSYQVQQDWAGKNCHPTEASMKKLINQEMSKRSNTRHNTPSIVARLMGMDMLPLDTKSVVQPIEKRNVAEINFSKKGRERTENGSIGHAPLNPNSSRQMEPREHPQEEELQKFKKEFEAWQAARFRECASVQKEYFSLSRSTSRDFDQSPMMNCDKKLEKSSAPTRIVILKPGPDRIGNTDESWASSSGTLEERDSIEDFLEEVKERLKHELQGKTRKRVTLVRGESVTRDLGMNLLRSESTRSYRSEIQLNGSGSPEFINRDTRKFLSERLRNVLKRETHQDIPIVVNGSSRPMNHWENVNNEAEMQTRSFRHGPDDDAVIHRESSPRNLIRSLSAPVSGTSFGKLLLEDRRILTGAHIRRKHEVTENLSVDVKKGSKEKFNLKEKVSNFKYSFTFRGRLFGRKIQSAVESCGIEHDPMKDIMSGPTVIMNLGDRHENSTEVPPSPASVCSSAHEEFFRPGDYVSPVSTPDLPLVEDYPVPHLFREISSNLNELRRQLDQLGSNGSEDTTIDEEPPEVEIIELEDQAEAYIRDLLVASGFYGGSSDTVLSRWDPLARPISNRVFDKVEESYKKLAKDSEGSPEADGEKKVDHKVLLDLLNEALSTVLGPPVGMSRFRRKFMGSTMLSAPHGKKLLDCVWEIIRVHVYPPADKSCYSLDSMVARDLGSIPWSGLIDDEMNALGRDMESMIIGGLVDEIVKDMLLGWWTS* 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20833740 20841170 + Vvi4g1198 Vvi4g1198 785977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1198 763 Coils Coil 252 272 - -
Vvi4g1198 763 Pfam DUF761-associated sequence motif 93 107 IPR032795 -
Vvi4g1198 763 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 185 - -
Vvi4g1198 763 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 186 757 - -
Vvi4g1198 763 MobiDBLite consensus disorder prediction 125 163 - -
Vvi4g1198 763 Pfam Domain of unknown function (DUF4378) 584 751 IPR025486 -
Vvi4g1198 763 Coils Coil 539 559 - -
Vvi4g1198 763 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 186 757 - -
Vvi4g1198 763 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 185 - -
Vvi4g1198 763 MobiDBLite consensus disorder prediction 225 245 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1198 - - - vvi:100260782 1085.48
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1198 Blo04g00861 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0900 Cone12ag0871 . . . . . . . . Bda11g01810 . . . Bma03g00929 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008231 2 4 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 35