Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1199 ATGAAGGTGATGACAGACGCCCAAATGGAAATTCTGAGGAAGCAGATATCTGTGTATGCCACCATATGTGAACAGCTCGTTGAGATGCATAAATCACTCACTTCTCACCAAGATCTTGCAGGAGTCAGACTGGGAAATCTATATTGTGACCCATTAATGACATCTACTGGTCACAAAATTACTGCCAGACAGCGGTGGACACCGACACCAGTGCAGCTTCAAATTCTTGAGCGTATTTTTGATCAAGGATATGGCACTCCAAGCAAGCAGAAGATCAAAGAGATAACCTCTGATTTGAGCCAGCATGGCCAAATTTCTGAAACAAATGTCTATAATTGGTTCCAGAATAGGCGTGCACGGTCAAAAAGGAAGCAATTGGTTACAGCACCTAACAATGCTGACTCAGAAGTGGAGACAGAAGTTGAGTCACCTAAGGATAAGAAAACAAAGTCTGAGAATTTCCTCCCCCAACAGAACTCAGCTTCAAGGCCTGAGGATCTCTGCTTTCAGAACCCCGAGCTAGGCTCCAGATTGGATTTCTTAGACCAACAGACCCATAAAGAAGAAGCCATATTTCCATCAGATGGAGGAATAAAACCTTCTGGAAATCTGAGCCCAGTAGCTTTCTATGCAGGAAATGATCACCAAATTGGGAAGATGGAAGTTCCAGGGAGCTATAATCCATATCAGCAGACAGAAGACTACAGCATGTCAGGATGA 720 43.75 MKVMTDAQMEILRKQISVYATICEQLVEMHKSLTSHQDLAGVRLGNLYCDPLMTSTGHKITARQRWTPTPVQLQILERIFDQGYGTPSKQKIKEITSDLSQHGQISETNVYNWFQNRRARSKRKQLVTAPNNADSEVETEVESPKDKKTKSENFLPQQNSASRPEDLCFQNPELGSRLDFLDQQTHKEEAIFPSDGGIKPSGNLSPVAFYAGNDHQIGKMEVPGSYNPYQQTEDYSMSG* 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20843707 20847365 + Vvi4g1199 Vvi4g1199 785978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1199 239 SUPERFAMILY Homeodomain-like 62 125 IPR009057 -
Vvi4g1199 239 PANTHER - 1 237 - -
Vvi4g1199 239 MobiDBLite consensus disorder prediction 220 239 - -
Vvi4g1199 239 MobiDBLite consensus disorder prediction 121 166 - -
Vvi4g1199 239 Pfam Homeodomain 63 123 IPR001356 GO:0003677
Vvi4g1199 239 SMART HOX_1 61 128 IPR001356 GO:0003677
Vvi4g1199 239 Gene3D - 64 128 - -
Vvi4g1199 239 MobiDBLite consensus disorder prediction 138 152 - -
Vvi4g1199 239 MobiDBLite consensus disorder prediction 225 239 - -
Vvi4g1199 239 CDD homeodomain 63 125 IPR001356 GO:0003677
Vvi4g1199 239 ProSiteProfiles 'Homeobox' domain profile. 59 124 IPR001356 GO:0003677
Vvi4g1199 239 PANTHER WUSCHEL-RELATED HOMEOBOX 13 1 237 IPR044559 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g1199 Vvi18g82 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14713 PF00046 Homeodomain 1.80E-17 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1199 - - vvi:100267830 488.034