Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g1199 | ATGAAGGTGATGACAGACGCCCAAATGGAAATTCTGAGGAAGCAGATATCTGTGTATGCCACCATATGTGAACAGCTCGTTGAGATGCATAAATCACTCACTTCTCACCAAGATCTTGCAGGAGTCAGACTGGGAAATCTATATTGTGACCCATTAATGACATCTACTGGTCACAAAATTACTGCCAGACAGCGGTGGACACCGACACCAGTGCAGCTTCAAATTCTTGAGCGTATTTTTGATCAAGGATATGGCACTCCAAGCAAGCAGAAGATCAAAGAGATAACCTCTGATTTGAGCCAGCATGGCCAAATTTCTGAAACAAATGTCTATAATTGGTTCCAGAATAGGCGTGCACGGTCAAAAAGGAAGCAATTGGTTACAGCACCTAACAATGCTGACTCAGAAGTGGAGACAGAAGTTGAGTCACCTAAGGATAAGAAAACAAAGTCTGAGAATTTCCTCCCCCAACAGAACTCAGCTTCAAGGCCTGAGGATCTCTGCTTTCAGAACCCCGAGCTAGGCTCCAGATTGGATTTCTTAGACCAACAGACCCATAAAGAAGAAGCCATATTTCCATCAGATGGAGGAATAAAACCTTCTGGAAATCTGAGCCCAGTAGCTTTCTATGCAGGAAATGATCACCAAATTGGGAAGATGGAAGTTCCAGGGAGCTATAATCCATATCAGCAGACAGAAGACTACAGCATGTCAGGATGA | 720 | 43.75 | MKVMTDAQMEILRKQISVYATICEQLVEMHKSLTSHQDLAGVRLGNLYCDPLMTSTGHKITARQRWTPTPVQLQILERIFDQGYGTPSKQKIKEITSDLSQHGQISETNVYNWFQNRRARSKRKQLVTAPNNADSEVETEVESPKDKKTKSENFLPQQNSASRPEDLCFQNPELGSRLDFLDQQTHKEEAIFPSDGGIKPSGNLSPVAFYAGNDHQIGKMEVPGSYNPYQQTEDYSMSG* | 240 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 20843707 | 20847365 | + | Vvi4g1199 | Vvi4g1199 | 785978 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g1199 | 239 | SUPERFAMILY | Homeodomain-like | 62 | 125 | IPR009057 | - | |
Vvi4g1199 | 239 | PANTHER | - | 1 | 237 | - | - | |
Vvi4g1199 | 239 | MobiDBLite | consensus disorder prediction | 220 | 239 | - | - | |
Vvi4g1199 | 239 | MobiDBLite | consensus disorder prediction | 121 | 166 | - | - | |
Vvi4g1199 | 239 | Pfam | Homeodomain | 63 | 123 | IPR001356 | GO:0003677 | |
Vvi4g1199 | 239 | SMART | HOX_1 | 61 | 128 | IPR001356 | GO:0003677 | |
Vvi4g1199 | 239 | Gene3D | - | 64 | 128 | - | - | |
Vvi4g1199 | 239 | MobiDBLite | consensus disorder prediction | 138 | 152 | - | - | |
Vvi4g1199 | 239 | MobiDBLite | consensus disorder prediction | 225 | 239 | - | - | |
Vvi4g1199 | 239 | CDD | homeodomain | 63 | 125 | IPR001356 | GO:0003677 | |
Vvi4g1199 | 239 | ProSiteProfiles | 'Homeobox' domain profile. | 59 | 124 | IPR001356 | GO:0003677 | |
Vvi4g1199 | 239 | PANTHER | WUSCHEL-RELATED HOMEOBOX 13 | 1 | 237 | IPR044559 | GO:0003700 |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14713 | PF00046 | Homeodomain | 1.80E-17 | CL0123 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g1199 | - | - | vvi:100267830 | 488.034 |