Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1200 ATGACGGACGCCCAAGTGGAAATTCTGAGGAAGCAGATATCTGTGTATGCTACCATATGTGAACAGCTGGTTGAGATGCATAAATCACTCACTTCTCACCAAGATCTTGCAGGAGTCAGACTGGGAAATCTATATTGTGACCCATTAATGACATCTACTGGTCACAAAATTTCTGCCAGACAGCGGTGGACTCCGACACCAGTGCAGCTTCAAATTCTTGAGCGTATTTTTGATCAAGGATATGGTACTCCAAGCAAGCAAAAGATCAAAGAGATAACCTCTGATTTGAGCCAGCATGGCCAAATTTCTGAAACAAATGTCTATAATTGGTTCCAGAATAGGCGTGCACAATCAAAAAGAAAGCAATTGATTACAATGCCTAACAATGCTGAATCAGAAGTAGCGACGGAAGTTGAGTCACCTAAGGATCAGAAAACAAAGTCTGAGAATTTCCTCCCCCAACAGAACTCAGCTTCAAGGCCTGAGGATCTCTGCTTTCAGAACCCCGAGATAGGCTCTAGATTGCATTTCTTAGACCAACAGACCCATAAAGAAGAAAACATATTTCCATCAGATGGTGGAATAAAACCTTCTGGGAATCCAAGTCAAGTAGCTTTCTATGCAGGAAATGATCACCAAATTGGGAAGATGGAGGTTCCAGGGAGCTATAATCCATATCAACATACAGAAGACTACAGCATGACAGGATGA 711 42.19 MTDAQVEILRKQISVYATICEQLVEMHKSLTSHQDLAGVRLGNLYCDPLMTSTGHKISARQRWTPTPVQLQILERIFDQGYGTPSKQKIKEITSDLSQHGQISETNVYNWFQNRRAQSKRKQLITMPNNAESEVATEVESPKDQKTKSENFLPQQNSASRPEDLCFQNPEIGSRLHFLDQQTHKEENIFPSDGGIKPSGNPSQVAFYAGNDHQIGKMEVPGSYNPYQHTEDYSMTG* 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20861324 20865130 + Vvi4g1200 Vvi4g1200 785979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1200 236 SUPERFAMILY Homeodomain-like 59 122 IPR009057 -
Vvi4g1200 236 Pfam Homeodomain 60 120 IPR001356 GO:0003677
Vvi4g1200 236 SMART HOX_1 58 125 IPR001356 GO:0003677
Vvi4g1200 236 ProSiteProfiles 'Homeobox' domain profile. 56 121 IPR001356 GO:0003677
Vvi4g1200 236 PANTHER - 1 235 - -
Vvi4g1200 236 MobiDBLite consensus disorder prediction 126 162 - -
Vvi4g1200 236 CDD homeodomain 60 122 IPR001356 GO:0003677
Vvi4g1200 236 Gene3D - 61 124 - -
Vvi4g1200 236 PANTHER WUSCHEL-RELATED HOMEOBOX 13 1 235 IPR044559 GO:0003700
Vvi4g1200 236 MobiDBLite consensus disorder prediction 147 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1200 - - - vvi:100248809 484.952
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1200 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0901 Cone12ag0872 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi8g89 . 14 232 Wox Gene Family AT3G03660 55.9 8.3e-58 221.1
Vvi8g89 . 14 232 Wox Gene Family AT5G17810 51.0 3.5e-55 212.2
Vvi4g1199 ECH 1 240 Wox Gene Family AT4G35550 56.4 6.1e-68 254.6
Vvi18g82 ECH 1 244 Wox Gene Family AT4G35550 54.3 1.4e-67 253.4
Vvi4g1200 . 1 237 Wox Gene Family AT4G35550 55.9 6.8e-67 251.1
Vvi18g735 . 4 143 Wox Gene Family AT1G46480 69.0 1.5e-52 203.0
Vvi13g442 ECH 19 174 Wox Gene Family AT3G11260 57.4 4.6e-43 171.4
Vvi18g735 . 4 143 Wox Gene Family AT1G46480 69.0 1.5e-52 203.0
Vvi13g442 ECH 19 174 Wox Gene Family AT3G11260 57.4 4.6e-43 171.4
Vvi8g89 . 14 232 Wox Gene Family AT3G03660 55.9 8.3e-58 221.1
Vvi8g89 . 14 232 Wox Gene Family AT5G17810 51.0 3.5e-55 212.2
Vvi4g1199 ECH 1 240 Wox Gene Family AT4G35550 56.4 6.1e-68 254.6
Vvi18g82 ECH 1 244 Wox Gene Family AT4G35550 54.3 1.4e-67 253.4
Vvi4g1200 . 1 237 Wox Gene Family AT4G35550 55.9 6.8e-67 251.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14714 PF00046 Homeodomain 6.60E-17 CL0123 Vvi TF