Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1200 ATGACGGACGCCCAAGTGGAAATTCTGAGGAAGCAGATATCTGTGTATGCTACCATATGTGAACAGCTGGTTGAGATGCATAAATCACTCACTTCTCACCAAGATCTTGCAGGAGTCAGACTGGGAAATCTATATTGTGACCCATTAATGACATCTACTGGTCACAAAATTTCTGCCAGACAGCGGTGGACTCCGACACCAGTGCAGCTTCAAATTCTTGAGCGTATTTTTGATCAAGGATATGGTACTCCAAGCAAGCAAAAGATCAAAGAGATAACCTCTGATTTGAGCCAGCATGGCCAAATTTCTGAAACAAATGTCTATAATTGGTTCCAGAATAGGCGTGCACAATCAAAAAGAAAGCAATTGATTACAATGCCTAACAATGCTGAATCAGAAGTAGCGACGGAAGTTGAGTCACCTAAGGATCAGAAAACAAAGTCTGAGAATTTCCTCCCCCAACAGAACTCAGCTTCAAGGCCTGAGGATCTCTGCTTTCAGAACCCCGAGATAGGCTCTAGATTGCATTTCTTAGACCAACAGACCCATAAAGAAGAAAACATATTTCCATCAGATGGTGGAATAAAACCTTCTGGGAATCCAAGTCAAGTAGCTTTCTATGCAGGAAATGATCACCAAATTGGGAAGATGGAGGTTCCAGGGAGCTATAATCCATATCAACATACAGAAGACTACAGCATGACAGGATGA 711 42.19 MTDAQVEILRKQISVYATICEQLVEMHKSLTSHQDLAGVRLGNLYCDPLMTSTGHKISARQRWTPTPVQLQILERIFDQGYGTPSKQKIKEITSDLSQHGQISETNVYNWFQNRRAQSKRKQLITMPNNAESEVATEVESPKDQKTKSENFLPQQNSASRPEDLCFQNPEIGSRLHFLDQQTHKEENIFPSDGGIKPSGNPSQVAFYAGNDHQIGKMEVPGSYNPYQHTEDYSMTG* 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20861324 20865130 + Vvi4g1200 Vvi4g1200 785979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1200 236 SUPERFAMILY Homeodomain-like 59 122 IPR009057 -
Vvi4g1200 236 Pfam Homeodomain 60 120 IPR001356 GO:0003677
Vvi4g1200 236 SMART HOX_1 58 125 IPR001356 GO:0003677
Vvi4g1200 236 ProSiteProfiles 'Homeobox' domain profile. 56 121 IPR001356 GO:0003677
Vvi4g1200 236 PANTHER - 1 235 - -
Vvi4g1200 236 MobiDBLite consensus disorder prediction 126 162 - -
Vvi4g1200 236 CDD homeodomain 60 122 IPR001356 GO:0003677
Vvi4g1200 236 Gene3D - 61 124 - -
Vvi4g1200 236 PANTHER WUSCHEL-RELATED HOMEOBOX 13 1 235 IPR044559 GO:0003700
Vvi4g1200 236 MobiDBLite consensus disorder prediction 147 162 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14714 PF00046 Homeodomain 6.60E-17 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1200 - - vvi:100248809 484.952