Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1201 ATGAGGAGCATCAAACCCTTGCCTGAGGCTGTTCACAGCTCAGTTCGGTCTGGAATAATCTTGTTTGACTTGACTAGGGTTGTGGAAGAGCTGATATATAACAGTCTTGATGCTGGTGCAACAAAGGTGTCTGTTTCTGTAAGCGTTGGGACCTGTTATATTAAAGTAGTCGATGATGGCACTGGTGTTACTCGGGATGGATTGGTATTGTTGGGAGAAAGATATGCAACATCAAAGCTTCATCATTTGACTGAAATGGATGCTGCTACTGGTAGCTTTGGTTTTCGGGGTGAAGCATTGGGCTCCATTTCTGATGTTTCATTGTTAGAAATAGTGACAAAAACTCAAGGAAGACCAAATGGATATCGCAAAGTCATGAAGGGCTGCAAATGTTTGTATCTTGGAATTGATGATGATAGGCAAGATGTAGGCACAACAGTTGTTGTCCGTGATTTATTTTACAACCAACCAGTTCGGAGGAAGTATTTGCAATCTAGCCCCAAGAAGGTCTTGCACTCGGTCAAGAAATGCGTATTTCGAATTGCCCTAGTTCACTCAAATGTTTCTTTCAAAGTTGTTGATATTGAAAGCGATGATGAGCTTCTCTGCACAAAATCGTCCTCTTCTCCTTTGTCACTGCTAATTAGTGGTTTGGGGATTGAGGATTCTAGCTCCCTTCATGAATTGAACATAACTGATGGTATATTAAAGCTTTCTGGATATGTTTCTGGTCCTTGCAATACTTTCTCCATTAAGGCCTTTCAATATGTCTGTATCCATGTCTATTCTTTTGATCCATGGAAGGCTAGCAGTGGCTCTCAAGACAAGAAAAGAAGTAGGTGTCAAGGATATCCAACATATATTTTGAACTTAAGGTGCCCTCAATCTCACTATGATTTAACTTTTGAACCATCGAGGACTGCTGTTGAGTTCAAGGACTGGGTTCCCATACTTGCCTTTCTTGAAAAAGCTGTTACACGCTTTTGGAGTGAACATATTGCACATGGAGAATCCTCTGTGCATGCAAATAAAACATCAGGACAAGAACTGTGGAAGGAACATGGCAATGTTGTATCAGCTGAAGAAGATTTGTCAGAAGTTGCAAAAAGGCAGTGCAGGATTCAAAATTGTCTTCTGGGCTGCCTCTCTTCCCCTATGGAGTTGCTAACTGAAGAGAATGACCATTTCTCTTGTAGAAAAGAAAATAAAATTCCATTTCAGAAGTTACGCAATGATACCTCAGAATTTGAAGGGCAACGGAATAAGATTGGATTTGTTCATCAAATTGACTCTTCATTCCAATCACTGGATGATTCTCCTTCCAAATGCATATCTGGTGTGCATCCACATACTGAGCACCTAGAGTTGCCTGATGACAACTTTTTCATTACAAAAAACAACTTCCTGGAGAATAAATTCACAGTTCTAGAAAGTTCTTTTGATCATGTAGAGGACAAGATTTTGGGTTCAACATGGGGGAATGAGTCCCTTAATGTTGATCATGATATGGGCAATGGATTTAGTGCACTATCTTATAACAGTTATGAATTCAGGAATGGTGTTGAGGAGGCCAGCAAGGATTTCAAGAAACCTATTCTGCAGAGTTGCTCCTTGGGGAGAAGCTTGCTATCTGATTGGGAGAGTGATAAATTTGAATTTCAAATTGATGGCTTGAGGACTAGGCAAAGGCAGATTGACCATAATAAGAGCTTTGATTTTTTTCCAGGTACTGCATGGCAGGAAGAGGCATCAAGTGATTGGCCCTCTTCCAGACTCAAAACAAAACCTGAAATGTGTACAGGTTTAGATTTTATGTCCAGAGATTCTTTAAAGTCACTCTCAACTTATAGAGAACGTTTTGCAGTGGAGAACAACTTGCCACCTGATTCAGTTGAACAAAGTGGAAAATTTGGCTCAGGCCATCTGTCTTTGAACTCTGAATGCTGTTCTATGGTATCACAAAGCTTATTTCAGACCACACCTTGGGATGTTGAACATTTCACCCATGAAAATACTCCTCAAGGGGGCCTTGGATCTGATAGGAATGTTAGTTATGAACATTTTATAGATAGTGAAAGTGGGGGATGGATTTTCAGTCATGATATTATGCCAAGTAGCTCCAGCCAAGAAAACTGCTCATCCTCAAGTTGTATAAACACTGGATTAGGTCTTAAGGACTACACTGTTCCAAGTAGAGATATCTACAGACTTCTTAAAGAGAACAATCTGGATAATATCTTTACTCCAAGACATTCTGATATACTAAGTATTGAAACAGATTGGTTATACTCAAAATCATGTGGTAAAGATAACAACAATAATCGTGCAGTGCCATCATGCAGCATTCCTTTATCTACCAATATTCACAAGGACGAAAACAAAAAAGAGAGGCTCAGATACCAAAATTGTGGACAAATTCATGCTTCAAAAGAAAGATCAAGAAGTCATTCAGCTCCACCAATTTACAGAGGCAAGAGAAAGTTCTTGGCCTTAAATGATCATTGGACAATGGAATCAAAAAAAGTAGATGTCATTGATAGCCATGATGCCCCCACTTTTCCAGAAACTGATGAATTGAAGCATCCTCTACAATCTTCTGGTGCATGTAATCAGTATTTTAAGCCAAGCTTTTTGGAAGACCCATTGTTCTATGGCAGATCTGATATGAAGAAAATGCTGGAAAATGAACCAGATATGGATAAGATTCAAAATATTGACATTTTTAGGAAGTCTCAATGTCTCCCTATTGATGATGATTCTTATTCTTTCAAAGACTTTACCACAAAGGAAGCTACAGATTTGATGAACTCTGAGAGCAAGTGGAGGAATAACTGTCCAAAAATTGCAAGTGGAGATAAATCGCAGAAGTTTAATGATCAATACAATGTACTTGACATCTCTTCGGGGATCTTGCACCTTGCTGGCGATTCATTAATTCCACAATCCATAACTAAGAATTGCCTTCAGGATGCCAAAGTTCTCCAACAGGTGGACAAGAAATTTATCCCAGTTGTGGCTGATGGAACGCTTGCTATTATTGACCAGCATGCTGCGGATGAAAGAATTCGACTGGAAGAACTCCGCCAGAAAGTGTTATCTGGAGAAGTGAAGACAATTACATATCTGGATGCTGAGCAAGAGTTGGTACTGCCAGAGATTGGCTATCAGTTACTGCACACTTATGCTGAACAGATACAGAATTGGGGTTGGATCTGCAACATACATGCTCAGAATTCAAGGTCCTTCACAAAGAATTTGGATCTTCTTCACAAAAAGCCAACTGTTATCACACTTCTTGCGGTACCCTGTATTTTAGGTGTCAACTTATCAGATGTAGATCTTTTAGAATTTCTTCAGCAGCTTGCTGATACAGATGGATCATCAACAATGCCGCCATCTGTTCTCCGGGTCCTTAATCTCAAAGCATGCCGAGGGGCTATCATGTTTGGGGACGCTTTGCTACCTTCAGAATGTTCCCTTATTGTTGAAGAGCTAAAGCGGACCTCCTTGTGTTTCCAGTGTGCTCATGGACGACCAACAACTGTTCCCCTTGTCAACTTGGAGGCCTTGCATAAACAGATAGCAAAGCTTGGGTCGGGGGGTGGTGGTTCAATTGAGTTGTGGCATGGATTACGACGACATGAACTTAGTCTTGAACGTGCTGCACATCGTTTGAACTCATCTATGGGTTAA 3693 40.29 MRSIKPLPEAVHSSVRSGIILFDLTRVVEELIYNSLDAGATKVSVSVSVGTCYIKVVDDGTGVTRDGLVLLGERYATSKLHHLTEMDAATGSFGFRGEALGSISDVSLLEIVTKTQGRPNGYRKVMKGCKCLYLGIDDDRQDVGTTVVVRDLFYNQPVRRKYLQSSPKKVLHSVKKCVFRIALVHSNVSFKVVDIESDDELLCTKSSSSPLSLLISGLGIEDSSSLHELNITDGILKLSGYVSGPCNTFSIKAFQYVCIHVYSFDPWKASSGSQDKKRSRCQGYPTYILNLRCPQSHYDLTFEPSRTAVEFKDWVPILAFLEKAVTRFWSEHIAHGESSVHANKTSGQELWKEHGNVVSAEEDLSEVAKRQCRIQNCLLGCLSSPMELLTEENDHFSCRKENKIPFQKLRNDTSEFEGQRNKIGFVHQIDSSFQSLDDSPSKCISGVHPHTEHLELPDDNFFITKNNFLENKFTVLESSFDHVEDKILGSTWGNESLNVDHDMGNGFSALSYNSYEFRNGVEEASKDFKKPILQSCSLGRSLLSDWESDKFEFQIDGLRTRQRQIDHNKSFDFFPGTAWQEEASSDWPSSRLKTKPEMCTGLDFMSRDSLKSLSTYRERFAVENNLPPDSVEQSGKFGSGHLSLNSECCSMVSQSLFQTTPWDVEHFTHENTPQGGLGSDRNVSYEHFIDSESGGWIFSHDIMPSSSSQENCSSSSCINTGLGLKDYTVPSRDIYRLLKENNLDNIFTPRHSDILSIETDWLYSKSCGKDNNNNRAVPSCSIPLSTNIHKDENKKERLRYQNCGQIHASKERSRSHSAPPIYRGKRKFLALNDHWTMESKKVDVIDSHDAPTFPETDELKHPLQSSGACNQYFKPSFLEDPLFYGRSDMKKMLENEPDMDKIQNIDIFRKSQCLPIDDDSYSFKDFTTKEATDLMNSESKWRNNCPKIASGDKSQKFNDQYNVLDISSGILHLAGDSLIPQSITKNCLQDAKVLQQVDKKFIPVVADGTLAIIDQHAADERIRLEELRQKVLSGEVKTITYLDAEQELVLPEIGYQLLHTYAEQIQNWGWICNIHAQNSRSFTKNLDLLHKKPTVITLLAVPCILGVNLSDVDLLEFLQQLADTDGSSTMPPSVLRVLNLKACRGAIMFGDALLPSECSLIVEELKRTSLCFQCAHGRPTTVPLVNLEALHKQIAKLGSGGGGSIELWHGLRRHELSLERAAHRLNSSMG* 1231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20870207 20881776 - Vvi4g1201 Vvi4g1201 785980

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1201 1230 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22 198 IPR036890 -
Vvi4g1201 1230 ProSitePatterns DNA mismatch repair proteins mutL / hexB / PMS1 signature. 94 100 IPR014762 -
Vvi4g1201 1230 Gene3D - 216 334 IPR014721 -
Vvi4g1201 1230 Gene3D - 2 208 IPR036890 -
Vvi4g1201 1230 CDD HATPase_MutL-MLH-PMS-like 16 202 - -
Vvi4g1201 1230 Pfam MutL C terminal dimerisation domain 992 1153 IPR014790 GO:0005524|GO:0006298
Vvi4g1201 1230 Gene3D - 1036 1148 IPR042121 -
Vvi4g1201 1230 SUPERFAMILY Ribosomal protein S5 domain 2-like 197 330 IPR020568 -
Vvi4g1201 1230 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 25 120 - -
Vvi4g1201 1230 SMART DNA_mis_repair_2 214 330 IPR013507 GO:0005524|GO:0006298|GO:0030983
Vvi4g1201 1230 Gene3D - 996 1184 IPR042120 -
Vvi4g1201 1230 SMART MutL_C_2 993 1153 IPR014790 GO:0005524|GO:0006298
Vvi4g1201 1230 PANTHER DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL 1 1189 IPR038973 GO:0006298|GO:0016887|GO:0032300|GO:0140664
Vvi4g1201 1230 PANTHER DNA MISMATCH REPAIR PROTEIN MLH3-RELATED 1 1189 IPR028830 GO:0006298
Vvi4g1201 1230 SUPERFAMILY DNA mismatch repair protein MutL 991 1184 IPR037198 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1201 K08739 MLH3; DNA mismatch repair protein MLH3 - vvi:100253902 2442.15
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1201 . . . . . . . Bma15g00886 . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0874 . . . . . . . Blo06g00254 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01046 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004629 1 6 2 1 0 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 3 0 1 40