Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1203 ATGGTGAAATCCCCAGAAGAAGAACACCCACAGAAGGCTTTTGGCTGGGCTGCGAGAGATCCCTCTGGGACTCTCTCTCCATTCCATTTCTCAAGAAGAGAAAATGGTGATGAGGATGTCACAGTCAAGATCCTCTATTGTGGGGTTTGTCATTCCGACTTGCATTCTGTTAAGAATGAATGGGGGATCACTAGGTACCCTATTGTTCCAGGGCATGAAATTGTTGGCATTGTGATCCAACTTGGAAATAATGTGAAGAAATTCAAAATGGGTGACCGAGTTGGGGTTGGTGTCTTAGTGGGCTCTTGCAAGACATGCGAGACTTGCCAACAAGACTTGGAGAATTACTGCCCCAGTATGATATTTACTTATAACTCCACTTCTCAAGATGGGACGAGGACTTATGGTGGTTATTCCGATATAGTGGTTGTTGACCAGCGGTATGTGCTCCGCATTCCTGATAACATGCCCTTAGATGCAGGGGCACCGCTACTTTGTGCTGGAATAACAGTGTATAGCCCAATGAAATACTATGGAATGACCGAGCCAGGCAAACATTTGGGAGTGGCAGGACTTGGTGGGCTTGGTCATGTTGCCGTGAAATTGGGCAAGGCATTTGGACTTAAGGTTACTGTTATTAGTACCTCGCCAAACAAGGAGGATGAAGCGATTAACAAACTTGGGGCTGATTGTTTCCTTGTTTCCACCAACCCTGAAAAAGTGCAGGCGGCTCTGGGTACTATGGACTACATCATCGATACAGTGTCTGCAATTCATTCCCTGGGTCCTCTCCTTGCCATGCTGAAGCTGAATGGAAAATTGATCACTGTGGGCTTGCCTGATAAACCCCTGGAACTGCCTATCTTCCCATTAGTTATGGGGCGGAAGCTCATTGGGGGAAGTGACATAGGAGGGATTAAAGAGACACAGGAAATGCTAGACTTTTGTGCAAAACACAATATTACTGCAGACATTGAGCTGATCCAGATGGACTACATTAACACGGCCATGAAGCGGCTTTCCAAATCTGATGTCAAGTACCGGTTTGTGATAGATGTCGCAAACTCCTTGTCCCAGTAG 1080 46.3 MVKSPEEEHPQKAFGWAARDPSGTLSPFHFSRRENGDEDVTVKILYCGVCHSDLHSVKNEWGITRYPIVPGHEIVGIVIQLGNNVKKFKMGDRVGVGVLVGSCKTCETCQQDLENYCPSMIFTYNSTSQDGTRTYGGYSDIVVVDQRYVLRIPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKLGKAFGLKVTVISTSPNKEDEAINKLGADCFLVSTNPEKVQAALGTMDYIIDTVSAIHSLGPLLAMLKLNGKLITVGLPDKPLELPIFPLVMGRKLIGGSDIGGIKETQEMLDFCAKHNITADIELIQMDYINTAMKRLSKSDVKYRFVIDVANSLSQ* 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20891375 20894224 - Vvi4g1203 Vvi4g1203 785982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1203 359 Gene3D - 16 353 - -
Vvi4g1203 359 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 11 357 - -
Vvi4g1203 359 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Vvi4g1203 359 PANTHER ALDEHYDE REDUCTASE 11 357 - -
Vvi4g1203 359 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Vvi4g1203 359 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491
Vvi4g1203 359 CDD CAD1 14 352 - -
Vvi4g1203 359 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Vvi4g1203 359 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 321 IPR036291 -
Vvi4g1203 359 Gene3D - 167 323 - -
Vvi4g1203 359 SUPERFAMILY GroES-like 19 185 IPR011032 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g1203 Vvi18g1169 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1203 K00083 - vvi:100245522 707.212