Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1214 ATGAAACTTCTCTCTTCAAGACCCATTTTCCTCTTCGCTTCTTATTTTTCTTCTCCACCGCCATACCTGTTCTTCATTTCTCATTTCACAACTTCTACAACCCCATTGTCTTCTTCTTACAGGCGCCACGAAGATGAGTCCCGAACCGTGAAAGTCTCGGTGTGGTGGGACTTCGAGAATTGTAATATCCCGGCGGGTGTTAACGTCTTCAAAATTGCGCATAGCATTACTGCTGCAGTTAGGGCTAATGGAATCAAGGGTCCCCTTCAGATTACGGCGTTTGGTGATGTTTCGCAGCTCGCGAGATCCAATCAGGAGGCTTTGTCTTCTACGGGAATCAATCTCGCTCACATTCCTAACGGTGGAAAGAACAGTGCTGATAGATCTCTTCTTCTAGATCTTATGTATTGGGTCTCTCAAAATCCTCCACCTGCACACCTTTTTTTAATTTCGGGTGATAGGGATTTTGCTAGCATTTTACACCGGTTAAGAATGAGCAACTACAATGTCTTGCTCGCAAGTCCAGGAACTGCTTCTGGAGTTCTCTGCAGTGCTGCAAGTATCATGTGGAATTGGAATGCTTTGGTTAGAGGGGAAAACCTTACTGGGAAACATTTTAACCAACCCCCAGATGGTCCCTATGGTTCTTGGTATGGTCATTTTAAGGTGCCTCTTGAAGACCCATTCTCAGTTGTTGAGCAACCATCATCTCCACAGGCTGAGGAGTTGTCTGAGCCTGGTTTAGATTCTAAGCTTCGTCCAATTCCAAGGATTGTGATGAGGCAGATTCGTCATATATTAAACTCGTACCCCAAAGGGGTTTCCATCACAGAACTCCGTTCAGAGTTGGGAAAAAGTAATGTGAAAATTGACAAAGATTTCTATGGATATAGAAAGTTTTCCCACTTTCTTTTGTCCATGCCGCACATTTTAAAGCTTCAAAGTAGAGGTGATGGCCAGTACTGTGTTCAAAGAATCGCATCAAAAGCTCCTGAACCTGTTGAGTCCATTGCACCTATATCAGTGGGGCCTGTTTCTAATAGTGAAAACAGGGAGCTCAGTTTAAATCCAAAGCTACACAACACGGAACTTTCTGGTAGTGGAGCTGTGAATGGGAAGTCATCACTGCCTCTATCCCCAGAACTAAAGAAGGTTGCTGAAACAACTAATGCACATGCAGCAGAGGAGCATTTGTCTCCTGTCGAGGGGCCAGAATCTTCGTCTGAAGTAGGCTTCTTTAAAAAAATATGGAGAAAATGGTTTAGCAGTAAGGACGGTGGTTTTGAGAAGGAAAGTAATAGAATCCCTGAAAAATGTGGTACTTGTGATGATAGCTCTGAGAAGATCAAATCTGAGGAAAAATGCATGGATTCCAAAAGCCAGCAAGCTGATCCAATAGAAATGGTGTCAATTTCTTCATCCAATGATGATGGGTCATTTCTGGACAAGAAATCCACCAGGAGTTCTGAAACATATGATGATAAATCTATTGCAAGCTCTAACTTCTTCAACAAGGTTGCAAATTGGTGTAAGTTTTGGAGAGCTAGCCCACAGTCTGACGTATTGAGTGATCAATCCTGGGAAAGACTGAACCAGATTAACAGTCATTCTGAAAAGCATGATTGTTTCTCAGAGGATTCTCTTTGGAGTGACATCAAATCATTTATGGCCACACCAAAAGGATCAGTTCTTGTTTCCCAGTCAAGGACCAGGGAACAAATGGCACAAAATCTGCGCAAGGAAGGGCCTCTGGTTCTTGGATCTCTCACGGAAACTGATCTGCTTCACTTGGTGGATTTATTAATTTCAGATAAAAAATGGGTTGAAGAAAACCCCACTCAAACTTCACCTTTCAAAGTCATTTGGCCTGTTGGAAAGAAATCTACTTCAAGTCAACCTCATGTTTCAAATGGGTTGAGCTCAATCTTTTTAGGCACGCAATCACATGAGATATTGGCCCATTGTCAAAAGCTTGTGGATGAGATTTTGAAGGAATACCCAGAAGGGTTCAATATGGGTGCCTTCAGAAAATTGTTCCTAGAGAGGTATGGCTATTCACTTGATGTACAGAAGCTTGGTTACCAAAGATTGGCATCACTTCTGCAGATAATGCCTGGGGTGAAAATAGAATCTACCTATATTGTTCCTTCCTGGACAGCTTCTAAAGGTTCCCTTTTGGAAAGTTCTGATACTAATGGTCAGGAGGACAATGAAGATGATCTTGACTCTCCATGGGAAGAACTTGGGCCTGTTGCTGACACAAATTCTAACAGAAATGAAATGGAATCAGAGCAAGAGAGGCCTAAAATAAGCAAGGAAGACAGCTCATTATTACGGATTCTTGATTCATGGTACAGCAGTAAAGAAGATAACAAGAGAAGGGATGGGGTAGAAAATGCTGATGGCATGATTGATTGTTCCAGAAATGATTTGAAGTCATCTGGTTCATCTGGATTTTTCTCTGAGGATGACACTTCTCCAATAAACTGCAGAAAGAAGCAAAGACCTGTTAGGAGCTATTCTTTTGTTTCAGACCATGGAGATGATAAGGACAAATTGATTGATGGTATATTAGGGAGCTTGAAAAAATCAGGTGAGTCAAGGATGCATAGCTGA 2616 42.09 MKLLSSRPIFLFASYFSSPPPYLFFISHFTTSTTPLSSSYRRHEDESRTVKVSVWWDFENCNIPAGVNVFKIAHSITAAVRANGIKGPLQITAFGDVSQLARSNQEALSSTGINLAHIPNGGKNSADRSLLLDLMYWVSQNPPPAHLFLISGDRDFASILHRLRMSNYNVLLASPGTASGVLCSAASIMWNWNALVRGENLTGKHFNQPPDGPYGSWYGHFKVPLEDPFSVVEQPSSPQAEELSEPGLDSKLRPIPRIVMRQIRHILNSYPKGVSITELRSELGKSNVKIDKDFYGYRKFSHFLLSMPHILKLQSRGDGQYCVQRIASKAPEPVESIAPISVGPVSNSENRELSLNPKLHNTELSGSGAVNGKSSLPLSPELKKVAETTNAHAAEEHLSPVEGPESSSEVGFFKKIWRKWFSSKDGGFEKESNRIPEKCGTCDDSSEKIKSEEKCMDSKSQQADPIEMVSISSSNDDGSFLDKKSTRSSETYDDKSIASSNFFNKVANWCKFWRASPQSDVLSDQSWERLNQINSHSEKHDCFSEDSLWSDIKSFMATPKGSVLVSQSRTREQMAQNLRKEGPLVLGSLTETDLLHLVDLLISDKKWVEENPTQTSPFKVIWPVGKKSTSSQPHVSNGLSSIFLGTQSHEILAHCQKLVDEILKEYPEGFNMGAFRKLFLERYGYSLDVQKLGYQRLASLLQIMPGVKIESTYIVPSWTASKGSLLESSDTNGQEDNEDDLDSPWEELGPVADTNSNRNEMESEQERPKISKEDSSLLRILDSWYSSKEDNKRRDGVENADGMIDCSRNDLKSSGSSGFFSEDDTSPINCRKKQRPVRSYSFVSDHGDDKDKLIDGILGSLKKSGESRMHS* 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20988398 20996526 - Vvi4g1214 Vvi4g1214 785993

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1214 871 ProSiteProfiles OST-type HTH domain profile. 651 730 IPR025605 -
Vvi4g1214 871 MobiDBLite consensus disorder prediction 427 446 - -
Vvi4g1214 871 Pfam OST-HTH/LOTUS domain 652 711 IPR025605 -
Vvi4g1214 871 Pfam OST-HTH/LOTUS domain 259 322 IPR025605 -
Vvi4g1214 871 MobiDBLite consensus disorder prediction 789 836 - -
Vvi4g1214 871 MobiDBLite consensus disorder prediction 809 824 - -
Vvi4g1214 871 MobiDBLite consensus disorder prediction 732 746 - -
Vvi4g1214 871 CDD LOTUS 652 709 - -
Vvi4g1214 871 PANTHER LIMKAIN B LKAP 10 809 IPR024768 GO:0005777|GO:0010468|GO:1903231
Vvi4g1214 871 CDD PIN_limkain_b1_N_like 51 175 - -
Vvi4g1214 871 Gene3D - 258 327 IPR041966 -
Vvi4g1214 871 CDD LOTUS 256 325 - -
Vvi4g1214 871 Gene3D - 646 714 IPR041966 -
Vvi4g1214 871 MobiDBLite consensus disorder prediction 724 774 - -
Vvi4g1214 871 Pfam NYN domain 51 186 IPR021139 GO:0004540
Vvi4g1214 871 Pfam OST-HTH Associated domain 568 615 IPR025677 -
Vvi4g1214 871 MobiDBLite consensus disorder prediction 759 774 - -
Vvi4g1214 871 PANTHER EMB|CAB71880.1 10 809 - -
Vvi4g1214 871 Gene3D - 43 194 - -
Vvi4g1214 871 ProSiteProfiles OST-type HTH domain profile. 255 327 IPR025605 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1214 - - - vvi:100259153 1673.68
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1214 . Blo16g00517 . . . Bpe13g00010 . . . Cmo20g01089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01353 . . . . Bma06g00530 . . . . Cma20g01079 . . . Cpe16g00066 Bhi10g02348 . . . . . . Cla02g00078 Cam02g0081 Cec02g0083 Cco02g0075 Clacu02g0079 Cmu02g0077 Cre02g0417 Lsi10g00700 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005338 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39