Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1228 ATGGAGAGTTTGGCAATTAGAACAAATGTAGGAAAAGCTAAGGTGTTGGGCACGATATTAAGCATAGGTGGTGCAATGATTCTCACATTTTACAAAGGAGTAGAGATGAATATATGGTCAACAAACATCAACTTGCTGCATCATCATCATCATGACATGACAGTTTCACAGCAGTCGTCTTCTGGCAATCAAGCATTGGGCGGATTTTTAGGTGTTGCCAGTGCTGTGTCTATGGCAATCTGGATGATACTTCAGGCTAAGTTGAGTATGGTATATCCATCTTACTCTGCTACTGCTCTTATGTCCATTTGTGCGTCCATCCAATCAGTTGTATATGCCCTTTGCACTGAAAGGGATTGGTCTGCATGGAAGCTTGGTTGGAATATCAGACTTGTCACTGTTGTTTATACTGGAGTGGTAGGCTCTGGGTTGATGGTTGCACTAATGACCTGGGTTGCACGCAGAAGGGGAGCATTGTTTATATCTTCTTTTTACCCATTATTGCTTGTTGTAGTCGCCATTGCTGGCTCACTGATGCTAGATGAGAAGCTACATGTGGGAAGCATGTTAGGAGCTGTGTTTATCATCCTGGGCTTATACAGCGTGCTATGGGGAAAAAGCAAGGAGATGATGACAACGACCCAACTCAATGCATTTAAAAGCTCTAAAGAATCAGAATCCAGAGATATTGCTGCTCACTTGCAAATGGGTGGGAAGTTGAGCCACGTTGTTGAAAGTCTAATGCCAGCCACAGTGATGGTCTTGGTTCAGGCAACGATCTCAGGAATTAATATTTTCTACAAACTGGCTAAGAATGATGGCATGAACACCATGATTATGGTGGCTTACAGATATATCTTTGCTGCAGCTGCTATGGCTCCTCTTGCTTTGATCCTTGAATGGAATAGTAGACCAAGAATGACATGGATGGTCTTCTTCCAGGGGTTTTTCTGTGGCCTGTTTGGAGGATCATTAGGGCAAAATCTCTTTGCGGAGAGCTTGGCTTTAACATCTGCAACATATGTATCAGCAATAGCTAATCTTGTTCCAGCTATGACATTTATCCTTGCCATTATCATGAGGGTGGAGAAGTTGGCAATTCAAACAAGCGGGGGGAAAGCAAAAGTGTCGGGTGTGATATTGAGCATAAGTGGGGCCATGGTTCTCACATTCTACAACGGAATAGAACTCAAGATTTGGACAACACACATCAACTTGCTAAGTGATGGTGGTAAGGTAGCAGCATCACAACATACCTCTCGTAATCAAGGATTGGGTGCCATAATGGCTGCAGCTAGTAGTTTGTCAGCTGCAATTTGGTTGATAATTCAGGCAGTTGTTGGCACTGGAGTAATGGTTTCACTAATGGCCTGGGTTTCAATGGTGAGAGGCCCAATATTTGTATCTTCTTTCTTTCCATTAATGCCTATAATGGTTGCAGTAGCTTCATCGCTATTACTCGATGAGAAGCTACATTTGGGAAGCGTAATAGGAGCAGTACTAATCATAATTGGACTGTATGTTGTGCTATGGGGAAAAGGAAAGGAGATGAAGAAAACGGCCCAACTTGACGGCTCGAAAAGCTTCAGGGGTTCAGGACTAGGAGACGTAGACTTAGGAACCTCATCCAGAGATGGTAATCGTCTTTCTCCTGGAGCTATTGTTCCCACCCAGATTAAGTTGGTAAAGTAA 1692 43.26 MESLAIRTNVGKAKVLGTILSIGGAMILTFYKGVEMNIWSTNINLLHHHHHDMTVSQQSSSGNQALGGFLGVASAVSMAIWMILQAKLSMVYPSYSATALMSICASIQSVVYALCTERDWSAWKLGWNIRLVTVVYTGVVGSGLMVALMTWVARRRGALFISSFYPLLLVVVAIAGSLMLDEKLHVGSMLGAVFIILGLYSVLWGKSKEMMTTTQLNAFKSSKESESRDIAAHLQMGGKLSHVVESLMPATVMVLVQATISGINIFYKLAKNDGMNTMIMVAYRYIFAAAAMAPLALILEWNSRPRMTWMVFFQGFFCGLFGGSLGQNLFAESLALTSATYVSAIANLVPAMTFILAIIMRVEKLAIQTSGGKAKVSGVILSISGAMVLTFYNGIELKIWTTHINLLSDGGKVAASQHTSRNQGLGAIMAAASSLSAAIWLIIQAVVGTGVMVSLMAWVSMVRGPIFVSSFFPLMPIMVAVASSLLLDEKLHLGSVIGAVLIIIGLYVVLWGKGKEMKKTAQLDGSKSFRGSGLGDVDLGTSSRDGNRLSPGAIVPTQIKLVK* 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21199522 21230747 + Vvi4g1228 Vvi4g1228 786007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1228 563 SUPERFAMILY Multidrug resistance efflux transporter EmrE 429 515 - -
Vvi4g1228 563 PANTHER WAT1-RELATED PROTEIN 446 531 - -
Vvi4g1228 563 PANTHER WAT1-RELATED PROTEIN 247 446 - -
Vvi4g1228 563 PANTHER WAT1-RELATED PROTEIN 1 235 - -
Vvi4g1228 563 SUPERFAMILY Multidrug resistance efflux transporter EmrE 283 391 - -
Vvi4g1228 563 SUPERFAMILY Multidrug resistance efflux transporter EmrE 127 207 - -
Vvi4g1228 563 PANTHER WAT1-RELATED PROTEIN 1 235 IPR030184 GO:0016021|GO:0022857
Vvi4g1228 563 PANTHER WAT1-RELATED PROTEIN 247 446 IPR030184 GO:0016021|GO:0022857
Vvi4g1228 563 PANTHER WAT1-RELATED PROTEIN 446 531 IPR030184 GO:0016021|GO:0022857
Vvi4g1228 563 Pfam EamA-like transporter family 434 510 IPR000620 GO:0016020|GO:0016021
Vvi4g1228 563 Pfam EamA-like transporter family 251 390 IPR000620 GO:0016020|GO:0016021
Vvi4g1228 563 Pfam EamA-like transporter family 67 203 IPR000620 GO:0016020|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1228 - - - vvi:100255679 576.244
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1228 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme08g01049 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000896 0 10 2 1 1 2 2 2 2 3 2 2 1 2 4 1 2 4 0 2 2 3 4 4 4 6 3 2 2 12 87