Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1232 ATGCAGGTTCCCAGATGGAGATATGTGTTCATTTCAAAGAATTCGTTGACCCCATTCTCAATAAGGGCAGCAATATCTTCTTCTTCCCACTTTGCTTCTTTTCATTCTACACCCGTTGCCTCTGAGAAGTGGAAGAACAAATGGAACCATGATTTTACAAGTCATCAGCCATCTAAGAATTATATCAGGTATGCATCACGTCAAAAGCGTACTGATGCAAGGAGAGCTTTGAAAGACCTCCTCTTCAATAATGGGTCTCCCAAATTTTCATTCCAGGATGAAGACTCAACTTGGAAAATAGATGGAGCAAGCAGCTGGGATGAAGAGGCTGAACATTCAGATAGCTCTAATAAGAAAGGTCGACCAAAGTCTTCTAATCGACGTGGTAGAAAAGCCCAGCACAACAGATTTAGACGTAAGTTTAGAAAAGATTATTTCTCTGAAGATGACTATTCTCCCGAGACAATCTTTCACGCAACGTTTGGGAATAGGAACAAATGGTGTACTTGGTCTTTCAACTCAGCGGGGTCATCTTCTTTCCAAAGTTCAACAAGCGCATTCGAGTGGAGGGGGCAGTCAAACCGGACCAACAATAGAAATAAAGAATGGGATACTGGCAGTGAAACTGAGTCTGATGGTGAGTCATGTGTTGTTGGCTCATATTCTGATAGAAGAATGCTGGGTCTGCCTCCAACAGGTCCTCTAAAGATCGAAGACGTCAAAAATGCTTTCCGTTTATCTGCTCTAAAATGGCATCCTGATAAACATCAAGGCCCTTCACAGGCAACAGCAGAAGAGAAATTCAAACTGTGTGTCAATGCATACAAATCATTGTGCAATGCTCTCTCCACAGTTTAA 858 42.07 MQVPRWRYVFISKNSLTPFSIRAAISSSSHFASFHSTPVASEKWKNKWNHDFTSHQPSKNYIRYASRQKRTDARRALKDLLFNNGSPKFSFQDEDSTWKIDGASSWDEEAEHSDSSNKKGRPKSSNRRGRKAQHNRFRRKFRKDYFSEDDYSPETIFHATFGNRNKWCTWSFNSAGSSSFQSSTSAFEWRGQSNRTNNRNKEWDTGSETESDGESCVVGSYSDRRMLGLPPTGPLKIEDVKNAFRLSALKWHPDKHQGPSQATAEEKFKLCVNAYKSLCNALSTV* 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21277030 21300415 + Vvi4g1232 Vvi4g1232 786011

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1232 285 MobiDBLite consensus disorder prediction 108 135 - -
Vvi4g1232 285 ProSiteProfiles dnaJ domain profile. 222 283 IPR001623 -
Vvi4g1232 285 CDD DnaJ 227 280 IPR001623 -
Vvi4g1232 285 SUPERFAMILY Chaperone J-domain 169 280 IPR036869 -
Vvi4g1232 285 SMART dnaj_3 221 283 IPR001623 -
Vvi4g1232 285 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 283 - -
Vvi4g1232 285 Pfam DnaJ domain 226 280 IPR001623 -
Vvi4g1232 285 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 1 283 - -
Vvi4g1232 285 MobiDBLite consensus disorder prediction 191 215 - -
Vvi4g1232 285 Gene3D DnaJ domain 194 283 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1232 - - - vvi:100267710 569.311
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1232 Blo04g00972 . . . Bpe15g00393 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01062 . . Bma03g01038 . Sed01g0039 . . . . . . . . Bhi10g02342 Tan07g0892 Cmetu11g0604 . Hepe08g1262 . . Cla02g00075 Cam02g0076 Cec02g0078 Cco02g0070 Clacu02g0074 Cmu02g0073 Cre02g0413 Lsi10g00705 . . Cme11g00079
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008268 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 35