Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1234 ATGGATGAAAGGGAATTCTGTTTATTTATATTTTTCTTTTTTAAACTCATGCTGGGAATTTCAGATTTTCCGGAGAGCTCCGGCACCGCCTCCGGCGGTCGGGAGGGTGAGGATGGAGGTGGTGGGGCTGTGCCCACTGGGTGTGAAGAAGAGGAGAGAGTGCGAGGCGAAGAGAGTGACCGGAATTTCGCCGGGAACCGGTGGCCTCGTGAGGAAACTTTGGCTTTGTTGAAGATAAGGTCTGATATGGACGTTGTTTTTAGGGACTCGAGTCTCAAAGCTCCTCTTTGGGAAGAGGTTTCTAGGAAATTGGGTGAGCTTGGATACCATCGAAACGCCAAAAAATGCAAGGAGAAGTTTGAGAACATCTTCAAATACCACAAAAGGACCAAGGAAGGGCGATCTAATCGACAAAACGGCAAAAATTATCGGTTTTTTGAGCAATTAGAAGCTCTAGATAATCATCCATTGATGCCACCTCCTTCCCCAGTCAAATATGAGACTTCTACACCCATGGCTGCATCAATGCCACAGACGAACCCCATAGACGTGACAAACGTTTCACAAGGCATCAATGCTGTGCCTTGTTCTATCCAAAAACCAGCTGTGGATTGCGTGGCAGCGTCTACTTCAACCACTTCCTCCTCAGGGAAAGAATCTGAAGGCAGCCGTAAGAAAAAGAGGAAGTGGGGTGTGTTCTTTGAGAAATTAATGAAAGAAGTGATAGAGAAGCAAGAGAATTTGCAAAGGAAGTTTATTGAGGCAATAGAGAAATGTGAACAGGATCGAATAGCTAGAGAGGAAGCTTGGAAGCTGCAAGAATTGGATAGAATTAAAAGAGAGCATGAGATTCTTGTTCAAGAACGGTCCATTGCAGCAGCAAAGGATGCGGCTAATTCTATTCAAATGAGCTCCTCCCGGTGGCCAAAAGCAGAAGTTGAAGCACTGATTAGACTTAGAACTAATTTCGATATGCAGTATCAAGAAAGTGGACCTAAAGGGCCCTTATGGGAGGAGATTTCACTAGCCATGAGAAAAATTGGTTATGAGAGGAGTGCCAAGAGGTGTAAAGAGAAATGGGAAAACATCAATAAGTACTTCAAGAGGGTAAGGGACAGCAACAAGAGAAGGCCTGAAGATTCAAAGACATGTCCATACTTTCATCAGCTCGATGCCCTCTACAAGGAGAAGACTAAGAAGGTAGAGAATCCAGATAACAATTCAGGCTATAACTTGAAGCCTGAAGACATTTTAATGCAAATGATGGGACAGTCAGAACAACGGCCACAGTCAGAATCAGTAACAGAAGAGGGGCTGCATTTTCTGAGACTTGGGACTTTATATACTTTATTTAATTATCAGAATTCATTGAGGGTTTCCCAGTCCTATCTCATAGTTGACATGGCCTTTTCTCCTTTAATCATGTGTGCTACTCTCCTTTTAGTATTGCTCGATGCTCAATGGAATCAGCTGGGTTATTGTGGACAGACAGAACTCCAGCCCCTAGCCCCCCCTATTGAAGGTTGTGGAGTGCTGGCGTATGGGTCAAGGCTTGTTGCCAATCAAGTTAGGGATGGAAAGAAAAAGTTCTCCTTTTGGGGCTTCAACTTGTTTGAATAA 1620 44.14 MDEREFCLFIFFFFKLMLGISDFPESSGTASGGREGEDGGGGAVPTGCEEEERVRGEESDRNFAGNRWPREETLALLKIRSDMDVVFRDSSLKAPLWEEVSRKLGELGYHRNAKKCKEKFENIFKYHKRTKEGRSNRQNGKNYRFFEQLEALDNHPLMPPPSPVKYETSTPMAASMPQTNPIDVTNVSQGINAVPCSIQKPAVDCVAASTSTTSSSGKESEGSRKKKRKWGVFFEKLMKEVIEKQENLQRKFIEAIEKCEQDRIAREEAWKLQELDRIKREHEILVQERSIAAAKDAANSIQMSSSRWPKAEVEALIRLRTNFDMQYQESGPKGPLWEEISLAMRKIGYERSAKRCKEKWENINKYFKRVRDSNKRRPEDSKTCPYFHQLDALYKEKTKKVENPDNNSGYNLKPEDILMQMMGQSEQRPQSESVTEEGLHFLRLGTLYTLFNYQNSLRVSQSYLIVDMAFSPLIMCATLLLVLLDAQWNQLGYCGQTELQPLAPPIEGCGVLAYGSRLVANQVRDGKKKFSFWGFNLFE* 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21315505 21327686 - Vvi4g1234 Vvi4g1234 786013

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1234 539 SMART sant 304 366 IPR001005 -
Vvi4g1234 539 SMART sant 64 126 IPR001005 -
Vvi4g1234 539 MobiDBLite consensus disorder prediction 48 64 - -
Vvi4g1234 539 CDD GT1 66 131 - -
Vvi4g1234 539 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2-LIKE 300 437 - -
Vvi4g1234 539 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2-LIKE 17 298 - -
Vvi4g1234 539 Coils Coil 238 262 - -
Vvi4g1234 539 Gene3D - 308 369 - -
Vvi4g1234 539 Gene3D - 68 129 - -
Vvi4g1234 539 ProSiteProfiles Myb-like domain profile. 300 364 IPR001005 -
Vvi4g1234 539 PANTHER - 300 437 - -
Vvi4g1234 539 PANTHER - 17 298 - -
Vvi4g1234 539 Pfam Myb/SANT-like DNA-binding domain 306 393 IPR044822 -
Vvi4g1234 539 Pfam Myb/SANT-like DNA-binding domain 66 152 IPR044822 -
Vvi4g1234 539 MobiDBLite consensus disorder prediction 27 64 - -
Vvi4g1234 539 ProSiteProfiles Myb-like domain profile. 60 124 IPR001005 -
Vvi4g1234 539 CDD GT1 306 371 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1234 - - - vvi:100247259 791.956
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1234 Blo04g00970 . . . Bpe15g00395 . . . Cmo02g00617 Cmo20g01084 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g01036 . Sed01g3751 . . . Cma20g01075 . . Cpe05g01074 . Bhi10g02341 Tan07g0890 Cmetu09g0584 . Hepe08g1260 . . Cla02g00074 Cam02g0075 Cec02g0077 Cco02g0069 Clacu02g0073 Cmu02g0072 Cre02g0412 Lsi10g00706 . . Cme11g00078
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008720 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14717 PF13837 Myb_DNA-bind_4 3.50E-21 CL0123 Vvi TF