Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1237 ATGGCTCGAAATGAAGAGAAAGCGCAGTCGATGCTCAATAGATTCATCACGCTCAAGAACGAAGAAAAGAAGAAGCCCAAAGAGCGCCGCCCCTACCTCGCCTCCGAGTGTCGTGACCTCGCCGAGGCCGACAAATGGCGCCAACAGATCATGCGCGAGATTGGCCGGAAAGTCGCCGAGATCCAGAACGAAGGCCTAGGCGAGCACCGCCTCCGAGATCTCAACGACGAGATCAACAAACTCATCCGCGAAAAGTCCCATTGGGAGCGCCGAATAATCGAATTGGGCGGCCCCAATTACACGAAACACTCCGCCAAAATGACTGATTTGGAAGGCAATATTGTCGATGTTCCTAACCCTAGCGGCCGCGGCCCCGGCTACCGTTACTTCGGTGCGGCGAAGAAACTCCCCGGAGTTCGAGAGTTGTTCGAGAAGCCGCCGGAGTTGAGGAAGAGAAAGTCACGGTACGATATATACAAGCGAATTGATGCGAGCTATTATGGGTACAGGGATGATGAGGATGGTGTGTTGGAGAAGGTGGAGGGACCGGCGGAGGAGCGGATGAGGGCAGCCAAGTTGGCAGAGTGGGAGGCATTGGAGGAGATAAAGAGGGAGGCGCGGAGGGCGAAAGAGAGAGAGTTTGTGGTGCACGTACCCCTGCCTGATGAGAAGGAAATTGAGAGGATGGTGGTGGAGAAGAAGAAGATGGAGCTCTTGAGCAAGTATACCAGCGAGGGGCTTTTGGAGGAGCAGACCGAGGCTAAAGCTATGCTTAATATTCAGCGATAA 789 54.25 MARNEEKAQSMLNRFITLKNEEKKKPKERRPYLASECRDLAEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKSHWERRIIELGGPNYTKHSAKMTDLEGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELFEKPPELRKRKSRYDIYKRIDASYYGYRDDEDGVLEKVEGPAEERMRAAKLAEWEALEEIKREARRAKEREFVVHVPLPDEKEIERMVVEKKKMELLSKYTSEGLLEEQTEAKAMLNIQR* 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21377335 21378232 - Vvi4g1237 Vvi4g1237 786016

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1237 262 Coils Coil 71 91 - -
Vvi4g1237 262 Gene3D Helix hairpin bin 39 96 IPR029012 -
Vvi4g1237 262 PANTHER PRE-MRNA-SPLICING FACTOR ISY1 1 259 IPR009360 GO:0000350
Vvi4g1237 262 Pfam Isy1-like splicing family 1 241 IPR009360 GO:0000350
Vvi4g1237 262 SUPERFAMILY ISY1 domain-like 27 102 IPR037200 GO:0000350
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1237 K12870 ISY1; pre-mRNA-splicing factor ISY1 - vvi:100250525 481.1
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1237 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo05g00558 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005138 1 2 1 0 1 2 1 2 2 1 3 2 1 1 2 1 1 2 1 2 1 1 1 1 4 1 1 1 0 1 41