Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1238 ATGGCGATAAGATGTACGGATTTCGGGGTGAAAAGTTGGTTTGCTTCCAACCCTAGAAATTATGCTTCGATAAATGTTAGGATTTTCACCATCAGATGCTCCTCAGGTGCCGCTGCCACCGCCGTCGGTTTGGGTGAAAGACCCTGGAAAACATCCGATGCTAGACTTGTTCTTGAAGATGGCTCAGTCTGGAAGGCAAAGTCATTTGGTGCTTCAGGAACTCAAGTTGGAGAAGTGGTTTTCAATACATCTTTAACAGGATATCAGGAAATTCTTACAGACCCTAGTTATGCTGGTCAGTTCGTCTTAATGACAAATCCACATATTGGCAACACGGGGGTAAATTTTGATGACGAAGAATCAAGTCAATGCTTTCTTGCTGGTTTAGTGATCAGAAGTCTAAGTATCGGTACTTCAAATTGGAGATGTGCAGAGACACTTGGTGACTATTTAGCAGAAAGGAACATTATGGGCATATATGATGTCGATACCCGGGCCATTACCCGTAGATTAAGACAAGATGGAAGCCTTATAGGTGTACTGAGCACAGAAGACTCTAAAACAGATGAGGAACTACTGAAAATTTCTTGCTCATGGGACATTGTGGGTGTTGATTTAATAAGTGGTGTTTCATGCAATTCTCCATATGAGTGGGTTGATAAAACAGGCTCAGAATGGGATTTTAACTCTAATGAGACAGCTGGAGAAACTTTTCGTGTTATCGCATATGATTTTGGGATCAAGCATAATATATTAAGACGTTTGGCATCCTATGGCTGTAAAATCACAGTTGTCCCATCAACATGGCCAGCTTCAGAGACCTTAAAGATGAAGCCTGATGGAGTTCTTTTCAGCAATGGCCCAGGAGACCCATCTGCAGTTCCATATGCTGTTGAAACAGTTAAAGAAATATTGGGAAAGGTTCCTGTTTTTGGCATTTGTATGGGACATCAGTTGCTTGGCCAGGCATTGGGTGGTAAAACCTTTAAAATGAAGTTTGGTCACCATGGTGGAAATCATCCAGTTCGTAACCTTCGGAGTGGTCGCGTTGAGATCAGTGCTCAGAATCATAACTATGCAGTAGACCCTGCATCACTGCCTGAGGGTGTGGAAGTGACGCATGTCAACCTTAATGATGGAAGTTGTGCAGGCCTTGCCTATCCTGCTCTGAATATCATGTCTCTTCAATACCACCCTGAAGCTTCTCCAGGGCCTCATGATTCGGATCCTGCCTTCAGGGAATTCATCCAGTTGATGAAGCAAGTAAAGCAAAATGCCTGA 1281 43.25 MAIRCTDFGVKSWFASNPRNYASINVRIFTIRCSSGAAATAVGLGERPWKTSDARLVLEDGSVWKAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESSQCFLAGLVIRSLSIGTSNWRCAETLGDYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEDSKTDEELLKISCSWDIVGVDLISGVSCNSPYEWVDKTGSEWDFNSNETAGETFRVIAYDFGIKHNILRRLASYGCKITVVPSTWPASETLKMKPDGVLFSNGPGDPSAVPYAVETVKEILGKVPVFGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNLRSGRVEISAQNHNYAVDPASLPEGVEVTHVNLNDGSCAGLAYPALNIMSLQYHPEASPGPHDSDPAFREFIQLMKQVKQNA* 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21388375 21395590 + Vvi4g1238 Vvi4g1238 786017

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1238 426 Gene3D - 51 198 IPR036480 -
Vvi4g1238 426 TIGRFAM CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 54 421 IPR006274 GO:0004088|GO:0006207|GO:0006541
Vvi4g1238 426 SMART CPSase_sm_chain_2 52 182 IPR002474 -
Vvi4g1238 426 PANTHER CARBAMOYL-PHOSPHATE SYNTHASE ARGININE-SPECIFIC SMALL CHAIN 26 422 - -
Vvi4g1238 426 PRINTS Anthranilate synthase component II signature 282 291 - -
Vvi4g1238 426 PRINTS Anthranilate synthase component II signature 309 320 - -
Vvi4g1238 426 PRINTS Anthranilate synthase component II signature 394 407 - -
Vvi4g1238 426 SUPERFAMILY Class I glutamine amidotransferase-like 232 422 IPR029062 -
Vvi4g1238 426 CDD GATase1_CPSase 240 416 IPR035686 -
Vvi4g1238 426 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 26 422 - -
Vvi4g1238 426 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 240 254 - -
Vvi4g1238 426 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 279 293 - -
Vvi4g1238 426 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 309 325 - -
Vvi4g1238 426 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 326 343 - -
Vvi4g1238 426 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 351 362 - -
Vvi4g1238 426 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 239 425 - -
Vvi4g1238 426 Pfam Glutamine amidotransferase class-I 243 417 IPR017926 -
Vvi4g1238 426 PRINTS Glutamine amidotransferase superfamily signature 282 291 - -
Vvi4g1238 426 PRINTS Glutamine amidotransferase superfamily signature 309 320 - -
Vvi4g1238 426 PRINTS Glutamine amidotransferase superfamily signature 394 407 - -
Vvi4g1238 426 Gene3D - 200 424 IPR029062 -
Vvi4g1238 426 Hamap Carbamoyl-phosphate synthase small chain [carA]. 52 423 IPR006274 GO:0004088|GO:0006207|GO:0006541
Vvi4g1238 426 SUPERFAMILY Carbamoyl phosphate synthetase, small subunit N-terminal domain 53 192 IPR036480 -
Vvi4g1238 426 Pfam Carbamoyl-phosphate synthase small chain, CPSase domain 56 180 IPR002474 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1238 K01956 carA, CPA1; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] - vvi:100255702 870.922
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1238 . . . . . . . . Cmo02g00618 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe05g01073 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005353 1 3 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 2 1 38