Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g1241 | ATGCGATTTTACTTGATTTTAGATTTGATTTTGATTTCTTCGTCCCGATCTGGTATTTTTGGTGTGATTTATTGTGAGAGAGGTAATAAAAGGATGGCCGATACTGAAGATATCCAGCCCCTCGTCTGTGACAATGGAACTGGAATGGTGAAGGCTGGATTTGCGGGTGATGATGCTCCCAGGGCAGTGTTTCCTAGTATTGTGGGTCGGCCAAGGCACACTGGTGTCATGGTTGGGATGGGTCAAAAAGATGCCTATGTTGGTGATGAAGCCCAATCTAAAAGAGGTATTCTTACCTTGAAGTATCCCATTGAACATGGTATTGTCAGCAATTGGGATGACATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGGGTTGCCCCTGAAGAACACCCAGTGCTTCTAACTGAGGCACCCCTCAACCCCAAGGCCAACAGAGAAAAGATGACTCAAATCATGTTTGAGACTTTTAATGTGCCTGCCATGTATGTTGCCATTCAGGCTGTTCTTTCTCTATATGCCAGTGGGCGTACAACTGGTATTGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTGCCAATTTATGAAGGTTATGCACTTCCCCATGCTATCCTTCGTCTTGACCTTGCTGGACGTGACCTCACTGATGCTCTGATGAAGATTCTAACTGAGAGGGGTTACATGTTCACCACTACTGCTGAACGGGAAATTGTCCGGGACATGAAGGAAAAGCTTGCATATGTTGCTCTTGACTACGAGCAAGAGCTGGAAACTGCAAAGAGCAGCTCCTCAGTTGAGAAGAACTATGAGCTGCCTGATGGGCAAGTCATTACTATTGGAGCTGAGAGATTCCGTTGTCCAGAAGTCCTCTTCCAGCCATCTCTCATTGGGATGGAAGCTGCAGGAATTCATGAGACTACCTACAACTCCATCATGAAGTGTGATGTTGATATCAGGAAGGACCTCTATGGCAACATTGTGCTTAGTGGTGGGTCAACCATGTTCCCTGGTATTGCTGACAGAATGAGCAAGGAAATCACTGCTCTTGCTCCCAGCAGCATGAAGATCAAGGTGGTGGCACCACCTGAGAGAAAGTACAGTGTCTGGATTGGAGGATCAATTCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGATCTCAAAGGGTGAATATGATGAATCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAA | 1227 | 46.21 | MRFYLILDLILISSSRSGIFGVIYCERGNKRMADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF* | 409 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 21427666 | 21430968 | - | Vvi4g1241 | Vvi4g1241 | 786020 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g1241 | 408 | PANTHER | ACTIN | 32 | 407 | IPR004000 | - | |
Vvi4g1241 | 408 | PANTHER | ACTIN | 32 | 407 | - | - | |
Vvi4g1241 | 408 | SUPERFAMILY | Actin-like ATPase domain | 37 | 186 | IPR043129 | - | |
Vvi4g1241 | 408 | ProSitePatterns | Actins signature 1. | 86 | 96 | IPR004001 | - | |
Vvi4g1241 | 408 | ProSitePatterns | Actins and actin-related proteins signature. | 137 | 149 | IPR020902 | - | |
Vvi4g1241 | 408 | Gene3D | Actin; Chain A, domain 4 | 213 | 304 | - | - | |
Vvi4g1241 | 408 | Gene3D | - | 41 | 402 | - | - | |
Vvi4g1241 | 408 | Gene3D | - | 171 | 371 | - | - | |
Vvi4g1241 | 408 | SUPERFAMILY | Actin-like ATPase domain | 180 | 408 | IPR043129 | - | |
Vvi4g1241 | 408 | ProSitePatterns | Actins signature 2. | 389 | 397 | IPR004001 | - | |
Vvi4g1241 | 408 | SMART | actin_3 | 38 | 408 | IPR004000 | - | |
Vvi4g1241 | 408 | CDD | NBD_sugar-kinase_HSP70_actin | 41 | 214 | - | - | |
Vvi4g1241 | 408 | Pfam | Actin | 36 | 408 | IPR004000 | - | |
Vvi4g1241 | 408 | PRINTS | Actin signature | 59 | 68 | IPR004000 | - | |
Vvi4g1241 | 408 | PRINTS | Actin signature | 82 | 93 | IPR004000 | - | |
Vvi4g1241 | 408 | PRINTS | Actin signature | 94 | 116 | IPR004000 | - | |
Vvi4g1241 | 408 | PRINTS | Actin signature | 148 | 161 | IPR004000 | - | |
Vvi4g1241 | 408 | PRINTS | Actin signature | 173 | 192 | IPR004000 | - | |
Vvi4g1241 | 408 | PRINTS | Actin signature | 269 | 285 | IPR004000 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g1241 | K10355 | - | vvi:100232866 | 758.444 |