Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1241 ATGCGATTTTACTTGATTTTAGATTTGATTTTGATTTCTTCGTCCCGATCTGGTATTTTTGGTGTGATTTATTGTGAGAGAGGTAATAAAAGGATGGCCGATACTGAAGATATCCAGCCCCTCGTCTGTGACAATGGAACTGGAATGGTGAAGGCTGGATTTGCGGGTGATGATGCTCCCAGGGCAGTGTTTCCTAGTATTGTGGGTCGGCCAAGGCACACTGGTGTCATGGTTGGGATGGGTCAAAAAGATGCCTATGTTGGTGATGAAGCCCAATCTAAAAGAGGTATTCTTACCTTGAAGTATCCCATTGAACATGGTATTGTCAGCAATTGGGATGACATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGGGTTGCCCCTGAAGAACACCCAGTGCTTCTAACTGAGGCACCCCTCAACCCCAAGGCCAACAGAGAAAAGATGACTCAAATCATGTTTGAGACTTTTAATGTGCCTGCCATGTATGTTGCCATTCAGGCTGTTCTTTCTCTATATGCCAGTGGGCGTACAACTGGTATTGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTGCCAATTTATGAAGGTTATGCACTTCCCCATGCTATCCTTCGTCTTGACCTTGCTGGACGTGACCTCACTGATGCTCTGATGAAGATTCTAACTGAGAGGGGTTACATGTTCACCACTACTGCTGAACGGGAAATTGTCCGGGACATGAAGGAAAAGCTTGCATATGTTGCTCTTGACTACGAGCAAGAGCTGGAAACTGCAAAGAGCAGCTCCTCAGTTGAGAAGAACTATGAGCTGCCTGATGGGCAAGTCATTACTATTGGAGCTGAGAGATTCCGTTGTCCAGAAGTCCTCTTCCAGCCATCTCTCATTGGGATGGAAGCTGCAGGAATTCATGAGACTACCTACAACTCCATCATGAAGTGTGATGTTGATATCAGGAAGGACCTCTATGGCAACATTGTGCTTAGTGGTGGGTCAACCATGTTCCCTGGTATTGCTGACAGAATGAGCAAGGAAATCACTGCTCTTGCTCCCAGCAGCATGAAGATCAAGGTGGTGGCACCACCTGAGAGAAAGTACAGTGTCTGGATTGGAGGATCAATTCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGATCTCAAAGGGTGAATATGATGAATCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAA 1227 46.21 MRFYLILDLILISSSRSGIFGVIYCERGNKRMADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF* 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21427666 21430968 - Vvi4g1241 Vvi4g1241 786020

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1241 408 PANTHER ACTIN 32 407 IPR004000 -
Vvi4g1241 408 PANTHER ACTIN 32 407 - -
Vvi4g1241 408 SUPERFAMILY Actin-like ATPase domain 37 186 IPR043129 -
Vvi4g1241 408 ProSitePatterns Actins signature 1. 86 96 IPR004001 -
Vvi4g1241 408 ProSitePatterns Actins and actin-related proteins signature. 137 149 IPR020902 -
Vvi4g1241 408 Gene3D Actin; Chain A, domain 4 213 304 - -
Vvi4g1241 408 Gene3D - 41 402 - -
Vvi4g1241 408 Gene3D - 171 371 - -
Vvi4g1241 408 SUPERFAMILY Actin-like ATPase domain 180 408 IPR043129 -
Vvi4g1241 408 ProSitePatterns Actins signature 2. 389 397 IPR004001 -
Vvi4g1241 408 SMART actin_3 38 408 IPR004000 -
Vvi4g1241 408 CDD NBD_sugar-kinase_HSP70_actin 41 214 - -
Vvi4g1241 408 Pfam Actin 36 408 IPR004000 -
Vvi4g1241 408 PRINTS Actin signature 59 68 IPR004000 -
Vvi4g1241 408 PRINTS Actin signature 82 93 IPR004000 -
Vvi4g1241 408 PRINTS Actin signature 94 116 IPR004000 -
Vvi4g1241 408 PRINTS Actin signature 148 161 IPR004000 -
Vvi4g1241 408 PRINTS Actin signature 173 192 IPR004000 -
Vvi4g1241 408 PRINTS Actin signature 269 285 IPR004000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1241 K10355 ACTF; actin, other eukaryote - vvi:100232866 758.444
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1241 . . . . . . . . Cmo02g00620 Cmo20g01080 Cma03g01077 Cma07g00783 Car03g00968 Car07g00770 Sed01g0035 Cpe19g00544 Cpe10g00351 Bhi03g01386 Tan03g1337 Cmetu11g0408 . Hepe04g1131 . . Cla01g01535 Cam01g1604 Cec04g1251 Cco04g1322 Clacu01g1630 Cmu01g1517 Cre04g1195 . . . . Lsi01g01130 . . Cme08g01062 . Blo06g00212 . . . Bpe06g00278 . . . . Cmo07g00807 . Cma20g01073 . . . Cpe16g00072 Bhi10g02339 Tan07g0883 . . Hepe08g1258 . . Cla02g00072 Cam02g0073 Cec02g0074 Cco02g0067 Clacu02g0071 Cmu02g0070 Cre02g0410 Lsi10g00709 Csa06g02804 Chy02g01031 Cme11g00076
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi13g295 . 1 378 Cytoskeleton Gene Families AT2G37620 96.3 2.3e-214 741.5
Vvi6g432 . 4 377 Cytoskeleton Gene Families AT2G37620 97.3 5.2e-214 740.3
Vvi4g1241 . 32 409 Cytoskeleton Gene Families AT2G37620 95.8 2.6e-213 738.0
Vvi11g52 . 2 377 Cytoskeleton Gene Families AT2G37620 67.8 1.5e-157 552.7
Vvi8g1271 . 1 290 Cytoskeleton Gene Families AT2G37620 74.3 1.3e-153 539.7
Vvi12g630 . 1 289 Cytoskeleton Gene Families AT2G37620 74.1 1.7e-153 539.3
Vvi13g295 . 1 378 Cytoskeleton Gene Families AT5G59370 96.8 1.0e-214 742.7
Vvi6g432 . 4 377 Cytoskeleton Gene Families AT5G59370 96.3 1.2e-210 729.2
Vvi4g1241 . 32 409 Cytoskeleton Gene Families AT5G59370 94.7 3.5e-210 727.6
Vvi11g52 . 2 377 Cytoskeleton Gene Families AT5G59370 67.8 9.9e-157 550.1
Vvi12g630 . 1 289 Cytoskeleton Gene Families AT5G59370 74.1 3.9e-153 538.1
Vvi8g1271 . 1 290 Cytoskeleton Gene Families AT5G59370 74.1 2.5e-152 535.4
Vvi13g295 . 1 378 Cytoskeleton Gene Families AT3G46520 97.1 4.7e-215 743.8
Vvi6g432 . 4 377 Cytoskeleton Gene Families AT3G46520 96.5 5.3e-211 730.3
Vvi4g1241 . 32 409 Cytoskeleton Gene Families AT3G46520 95.0 1.6e-210 728.8
Vvi11g52 . 2 377 Cytoskeleton Gene Families AT3G46520 67.6 2.9e-156 548.5
Vvi12g630 . 1 289 Cytoskeleton Gene Families AT3G46520 74.1 3.9e-153 538.1
Vvi8g1271 . 1 290 Cytoskeleton Gene Families AT3G46520 74.1 2.5e-152 535.4
Vvi13g295 . 1 378 Cytoskeleton Gene Families AT3G12110 97.1 1.5e-216 748.8
Vvi6g432 . 4 377 Cytoskeleton Gene Families AT3G12110 97.3 2.0e-213 738.4
Vvi4g1241 . 32 409 Cytoskeleton Gene Families AT3G12110 95.8 9.7e-213 736.1
Vvi11g52 . 2 377 Cytoskeleton Gene Families AT3G12110 68.6 1.8e-158 555.8
Vvi8g1271 . 1 290 Cytoskeleton Gene Families AT3G12110 75.1 9.3e-155 543.5
Vvi12g630 . 1 289 Cytoskeleton Gene Families AT3G12110 74.6 6.0e-154 540.8
Vvi13g295 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 5.9e-210 726.9
Vvi4g1241 . 32 409 Cytoskeleton Gene Families AT3G18780 92.6 1.5e-208 722.2
Vvi6g432 . 1 377 Cytoskeleton Gene Families AT3G18780 92.1 6.1e-207 716.8
Vvi11g52 . 4 377 Cytoskeleton Gene Families AT3G18780 67.6 2.9e-156 548.5
Vvi8g1271 . 1 290 Cytoskeleton Gene Families AT3G18780 72.2 1.8e-150 529.3
Vvi12g630 . 1 289 Cytoskeleton Gene Families AT3G18780 72.0 1.2e-149 526.6
Vvi13g295 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 2.0e-210 728.4
Vvi4g1241 . 32 409 Cytoskeleton Gene Families AT1G49240 92.9 5.0e-209 723.8
Vvi6g432 . 4 377 Cytoskeleton Gene Families AT1G49240 92.2 1.0e-206 716.1
Vvi11g52 . 2 377 Cytoskeleton Gene Families AT1G49240 67.6 9.9e-157 550.1
Vvi12g630 . 1 289 Cytoskeleton Gene Families AT1G49240 72.2 4.0e-150 528.1
Vvi8g1271 . 1 290 Cytoskeleton Gene Families AT1G49240 72.0 4.0e-150 528.1
Vvi4g1241 . 32 409 Cytoskeleton Gene Families AT5G09810 98.7 8.5e-217 749.6
Vvi13g295 . 1 378 Cytoskeleton Gene Families AT5G09810 96.0 2.0e-213 738.4
Vvi6g432 . 4 377 Cytoskeleton Gene Families AT5G09810 96.8 1.3e-212 735.7
Vvi11g52 . 2 377 Cytoskeleton Gene Families AT5G09810 68.4 8.9e-158 553.5
Vvi12g630 . 1 289 Cytoskeleton Gene Families AT5G09810 75.7 8.4e-156 547.0
Vvi8g1271 . 1 290 Cytoskeleton Gene Families AT5G09810 75.1 4.6e-154 541.2
Vvi9g263 ECH 1 132 Cytoskeleton Gene Families AT2G19760 76.5 1.3e-58 222.6
Vvi4g34 ECH 1 132 Cytoskeleton Gene Families AT2G19760 78.0 5.3e-57 217.2
Vvi11g252 ECH 1 129 Cytoskeleton Gene Families AT2G19760 74.4 1.7e-55 212.2
Vvi11g251 . 1 134 Cytoskeleton Gene Families AT2G19760 73.9 4.2e-54 207.6
Vvi9g263 ECH 1 132 Cytoskeleton Gene Families AT4G29350 75.0 9.0e-57 216.5
Vvi4g34 ECH 1 132 Cytoskeleton Gene Families AT4G29350 76.5 4.5e-56 214.2
Vvi11g251 . 1 134 Cytoskeleton Gene Families AT4G29350 74.6 8.5e-55 209.9
Vvi11g252 ECH 1 132 Cytoskeleton Gene Families AT4G29350 72.7 1.4e-54 209.1
Vvi4g34 ECH 1 87 Cytoskeleton Gene Families AT5G56600 81.6 1.0e-37 152.9
Vvi9g263 ECH 1 87 Cytoskeleton Gene Families AT5G56600 79.3 3.0e-37 151.4
Vvi11g251 . 1 134 Cytoskeleton Gene Families AT4G29340 82.2 1.9e-62 235.3
Vvi9g263 ECH 1 132 Cytoskeleton Gene Families AT4G29340 75.6 3.4e-59 224.6
Vvi4g34 ECH 1 132 Cytoskeleton Gene Families AT4G29340 73.3 5.1e-55 210.7
Vvi11g252 ECH 1 132 Cytoskeleton Gene Families AT4G29340 68.9 2.8e-53 204.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276