Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1241 ATGCGATTTTACTTGATTTTAGATTTGATTTTGATTTCTTCGTCCCGATCTGGTATTTTTGGTGTGATTTATTGTGAGAGAGGTAATAAAAGGATGGCCGATACTGAAGATATCCAGCCCCTCGTCTGTGACAATGGAACTGGAATGGTGAAGGCTGGATTTGCGGGTGATGATGCTCCCAGGGCAGTGTTTCCTAGTATTGTGGGTCGGCCAAGGCACACTGGTGTCATGGTTGGGATGGGTCAAAAAGATGCCTATGTTGGTGATGAAGCCCAATCTAAAAGAGGTATTCTTACCTTGAAGTATCCCATTGAACATGGTATTGTCAGCAATTGGGATGACATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGGGTTGCCCCTGAAGAACACCCAGTGCTTCTAACTGAGGCACCCCTCAACCCCAAGGCCAACAGAGAAAAGATGACTCAAATCATGTTTGAGACTTTTAATGTGCCTGCCATGTATGTTGCCATTCAGGCTGTTCTTTCTCTATATGCCAGTGGGCGTACAACTGGTATTGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTGCCAATTTATGAAGGTTATGCACTTCCCCATGCTATCCTTCGTCTTGACCTTGCTGGACGTGACCTCACTGATGCTCTGATGAAGATTCTAACTGAGAGGGGTTACATGTTCACCACTACTGCTGAACGGGAAATTGTCCGGGACATGAAGGAAAAGCTTGCATATGTTGCTCTTGACTACGAGCAAGAGCTGGAAACTGCAAAGAGCAGCTCCTCAGTTGAGAAGAACTATGAGCTGCCTGATGGGCAAGTCATTACTATTGGAGCTGAGAGATTCCGTTGTCCAGAAGTCCTCTTCCAGCCATCTCTCATTGGGATGGAAGCTGCAGGAATTCATGAGACTACCTACAACTCCATCATGAAGTGTGATGTTGATATCAGGAAGGACCTCTATGGCAACATTGTGCTTAGTGGTGGGTCAACCATGTTCCCTGGTATTGCTGACAGAATGAGCAAGGAAATCACTGCTCTTGCTCCCAGCAGCATGAAGATCAAGGTGGTGGCACCACCTGAGAGAAAGTACAGTGTCTGGATTGGAGGATCAATTCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGATCTCAAAGGGTGAATATGATGAATCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAA 1227 46.21 MRFYLILDLILISSSRSGIFGVIYCERGNKRMADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF* 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21427666 21430968 - Vvi4g1241 Vvi4g1241 786020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1241 408 PANTHER ACTIN 32 407 IPR004000 -
Vvi4g1241 408 PANTHER ACTIN 32 407 - -
Vvi4g1241 408 SUPERFAMILY Actin-like ATPase domain 37 186 IPR043129 -
Vvi4g1241 408 ProSitePatterns Actins signature 1. 86 96 IPR004001 -
Vvi4g1241 408 ProSitePatterns Actins and actin-related proteins signature. 137 149 IPR020902 -
Vvi4g1241 408 Gene3D Actin; Chain A, domain 4 213 304 - -
Vvi4g1241 408 Gene3D - 41 402 - -
Vvi4g1241 408 Gene3D - 171 371 - -
Vvi4g1241 408 SUPERFAMILY Actin-like ATPase domain 180 408 IPR043129 -
Vvi4g1241 408 ProSitePatterns Actins signature 2. 389 397 IPR004001 -
Vvi4g1241 408 SMART actin_3 38 408 IPR004000 -
Vvi4g1241 408 CDD NBD_sugar-kinase_HSP70_actin 41 214 - -
Vvi4g1241 408 Pfam Actin 36 408 IPR004000 -
Vvi4g1241 408 PRINTS Actin signature 59 68 IPR004000 -
Vvi4g1241 408 PRINTS Actin signature 82 93 IPR004000 -
Vvi4g1241 408 PRINTS Actin signature 94 116 IPR004000 -
Vvi4g1241 408 PRINTS Actin signature 148 161 IPR004000 -
Vvi4g1241 408 PRINTS Actin signature 173 192 IPR004000 -
Vvi4g1241 408 PRINTS Actin signature 269 285 IPR004000 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1241 K10355 - vvi:100232866 758.444