Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1248 ATGTACGTCGGATTGTCTCAAACGGATATCACTGTGTTTCTCATGGCTCCCACATCAATTATGTTCCTTTTATTCTTTCTGAATTCTATGGGTGTTAGAGCTGAAACAGCGGAACCCAAGCTGATAAAGTTGGGTTCTTCACTTTTTCCACACAATGGATCCAGTTCATGGGTCTCACCCTCCGGCCATTTTGCATTTGGTTTCTACCCGCAAGGCACTGGATTTGCAGTAGGCGTATGGCTGGTCAGTCAATCTGGAAACACCGTTGTCTGGACTGCAAACCGAGATAAGCCGCTGGTGTCCTTCAACACGACTCTTGAATTCACCACAAATGGTAAGCTGCTTCTTCGAACTGGGCCGGGTGAACAAATAACCATTGCAGATGTGGCAGAATCCGCAGCCTCAGCTTCTATGCTCGATTCTGGTAATTTTGTTCTCTTCGGTGATAATTCTTCTTCTATCATCTGGCAAAGCTTCCAATACCCAACTGATACCCTTCTGGGAGGCCAGAATTTTTCCACCGGCGATATACTGTCTTCCAGGAAAACGGAATCTCCTGCTATAGGAGATTTTTATCTTACAACTTTAGATGTTGATGGGATTTTCAGGTTGTATTCCCATAGCTTTGGGAACAGTAATATCTCCACTGTCTCCATTATGTGGTCGGCAATCAAAAACCCATGTGATGTGAAAGGTCTCTGCGGTGTTAATGCCTTATGTTCAAGCAATGGCACCAATGCCAACTGTTCTTGCGTTCCAGGGTTCGTATCCATTAACCGGGAGAAGTATTCGGGGTGCTACAGGAGCTTCAATAATGAAGAAGGATGCAGAGGACAAGAGCCAGAATCGATCTACAACATTACTACCTTAAGAAATGTGAAACTTATTTTAATCCTTGCTTCAAGTTTGGGTTCCATTGCTTTCTTATGTGCTCTAGTTGCAATGTCTAGCTTCTTTATATACAGAAGCCAAGTTCATCGGTACAGAAAGCTGTCAGAAACTGCAATGGAAGAGTTTACTCTGCGATCGTTTTCTTATAATGATCTGGAGAAAGCTACAGATGGGTTCAGGGAAGAGTTGGGTAGGGGTCCTTTTGGAGCAGTGTATAAAGGGACTATAGCTCAAGGCAACCAGACTATTGCTGTGAAGAGACTAGAAAAAGCTGTGGAAGAAGGAGAAAGGGAAGGGATCTTCTACCTCCATGAAGAGTGTGAGGTCCACATCATCCATGGCAACATAAAGCCTAAGAACATACTATTGGATGATTCTTGGACTGCCAAGCTTTCAGATTTCAGGCTAGCAAGGCTTCTGAGGCCTAATCAAACTGGAACCATTTCTCGTCTCGGAGGGAGTAGTAGAGGCTATTCAGCACCCGAGCGGCAGAAGAGGATGTTGATATCAGTGGAAGCAGATGTCTACAGTTTCGGAGTAGTGCTATTGGAGATTGTGTGTTGCAGAAGTAATTTGGATATCAATGTTTCAACAGGAGACGAGATACTTCTTTGCAGTTGGGTGTACAGTTGCTTTGTGGCAAGAGAGTTGGAGAAGCTTGTGGAAGGTGAAGAAGTGAACATGAAAACCCTGGAAAGGATGGTGAAGGTTGGATTATTGTGCATTCAAGATGATCCAAGTCTGCGCCCTACAATGAAGAATGTGATCCTGATGTTGGAAGGGACCATGAATGTGCCTGTACCTCCATCTCCAACTCCTCTATTTTCCTGA 1722 44.31 MYVGLSQTDITVFLMAPTSIMFLLFFLNSMGVRAETAEPKLIKLGSSLFPHNGSSSWVSPSGHFAFGFYPQGTGFAVGVWLVSQSGNTVVWTANRDKPLVSFNTTLEFTTNGKLLLRTGPGEQITIADVAESAASASMLDSGNFVLFGDNSSSIIWQSFQYPTDTLLGGQNFSTGDILSSRKTESPAIGDFYLTTLDVDGIFRLYSHSFGNSNISTVSIMWSAIKNPCDVKGLCGVNALCSSNGTNANCSCVPGFVSINREKYSGCYRSFNNEEGCRGQEPESIYNITTLRNVKLILILASSLGSIAFLCALVAMSSFFIYRSQVHRYRKLSETAMEEFTLRSFSYNDLEKATDGFREELGRGPFGAVYKGTIAQGNQTIAVKRLEKAVEEGEREGIFYLHEECEVHIIHGNIKPKNILLDDSWTAKLSDFRLARLLRPNQTGTISRLGGSSRGYSAPERQKRMLISVEADVYSFGVVLLEIVCCRSNLDINVSTGDEILLCSWVYSCFVARELEKLVEGEEVNMKTLERMVKVGLLCIQDDPSLRPTMKNVILMLEGTMNVPVPPSPTPLFS* 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21559586 21561962 - Vvi4g1248 Vvi4g1248 786027

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1248 573 Pfam D-mannose binding lectin 88 174 IPR001480 -
Vvi4g1248 573 SMART blect_4 48 162 IPR001480 -
Vvi4g1248 573 Pfam Protein kinase domain 395 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1248 573 Gene3D Transferase(Phosphotransferase) domain 1 394 562 - -
Vvi4g1248 573 Pfam S-locus glycoprotein domain 211 257 IPR000858 GO:0048544
Vvi4g1248 573 SUPERFAMILY Protein kinase-like (PK-like) 331 557 IPR011009 -
Vvi4g1248 573 ProSiteProfiles Protein kinase domain profile. 252 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1248 573 PANTHER S-RECEPTOR KINASE-LIKE PROTEIN 396 571 - -
Vvi4g1248 573 PANTHER S-RECEPTOR KINASE-LIKE PROTEIN 18 194 - -
Vvi4g1248 573 PANTHER S-RECEPTOR KINASE-LIKE PROTEIN 292 395 - -
Vvi4g1248 573 PANTHER S-RECEPTOR KINASE-LIKE PROTEIN 192 294 - -
Vvi4g1248 573 Coils Coil 511 531 - -
Vvi4g1248 573 Gene3D - 42 161 IPR036426 -
Vvi4g1248 573 ProSiteProfiles Bulb-type lectin domain profile. 42 159 IPR001480 -
Vvi4g1248 573 SUPERFAMILY alpha-D-mannose-specific plant lectins 88 206 IPR036426 -
Vvi4g1248 573 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 192 294 - -
Vvi4g1248 573 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 18 194 - -
Vvi4g1248 573 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 396 571 - -
Vvi4g1248 573 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 292 395 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1248 - - - vvi:100254123 482.256
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1248 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031886 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76595 PF00069 Pkinase 1.00E-16 CL0016 Vvi PK