Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1249 ATGGCTCCCATATCAATTATGTTCCTTTTATTCTTTCTCAATTCTATGGGTGTTAGAGCTCAAACAGCGAAACCCAAGCTCATAGAGTTGGGTTCTTCACTTTCTCCAACGAATGGATCCAGTTCATGGGTCTCACCCTCCGGTCATTTTGCATTTGGTTTCTACCCACAAGATACTGGATTCGCAGTAGGCGTATGGCTGGTCGGTCAATCTGGAAAGACCGTTGTCTGGACTGCTAACCGAGATGATCCGCCGGTGTCCTCCAACACTGCTCTTGAATTCACCAGAAATGGTAAGCTGCTTCTTCGAACTGGGCCGGGTGAAGAAGTATCCATTGCAGATGTGGCAGAATCCTCAGCCTCAGCTTCTATGCTCGATTCTGGTAATTTTGTTCTCTTCGGTGATAATTCTTCTTTTATCATCTGGCAAAGCTTCCAACACCCAACTGATACCCTTCTGGGAGGCCAGAATTTGTCCAATATACTGTCTTCCAGTAAAACGGAATCTTCTGCTATAGGAGCAACCTTAGATGTTGATGGGGTTTTCAGGTTGTATTCCCACAGCTTTGGGAACAGTAATATCTCCAGTGTCTCCATTATGTGGTCGGCATTCAAAAATCCATGTGATGTGAAAGGTCTCTGCGGTGTTAATGGCTTATGTTCAAGCAATGGCACCAATGCCAACTGTTCTTGCGTTCCAGGGTTCGTATCCATTAACCGGGAGAAAACGCTGTCAGAAAATGCAATGGAAGAGTTTACTCTGCGATCGTTTTCTTATAATGATCTGGAGAAAGCTACAGATGGGTTCAGGGAAGAGTTGGGTAGGGGTCCTTTTGGAGCAGTGTATAAAGGGACTATAGCTCAAGGCAACCAGACTATTGCTGTGAAGAGACTAGAAAAAGTTGTGGAAGAAGGAGAAAGGGAGTTCCAAGCAGAAATGACCATAATTGGGCGAACCCATCACAGGAACTTGGTCCGGTTGCTGGGTTTTTGTATGCAGGGCTCTAAGAAGCTTCTTGTTTATGAATACATGAGCAATGGCTCACTTGCAGATCTTCTCTTCAATGGTGAAAAGCGCCCGATTTGGAGAGAAAGAGTCAGAATTGCCCTAGATGTAGCAAGAGGGATCTTCTACCTCCATGAAGAGTGTGAGGTCCACATCATCCATGGCGACATAAAGCCTAAGAACATACTATTGGACGATTCTTGGACTGCCAAGCTTTCAGATTTCAGGCTAGCGAGGCTTCTGAGGCCTAATCAAACTGGAACCATTTCTCGTTTCGGAGGGAGTAGTAGAGGCTATTCGGCACCCGAGCGGCAGAAGAGGATGTTGATATCAGTGGAAGCAGATGTTTACAGTTTCGGAGTAGTGCTATTGGAGATTGTGTGTTGCAGAAGTAATTTGGATATCAATGTTTCGACAGGAGACGAGATACTTCTTTGCAGTTGGGTGTACAGTTGCTTTGTGGCAAGAGAGTTGGAGAAGCTTGTGGAAGGTGCAGAAGTGAACATGAAAACCCTGGAAAGGATGGTGAAGGTTGGATTATTGTGCATTCAAGATGATCCAAGTCTGCGCCCTACAATGAAGAATGTGATCCTGATGTTGGAAGGGACCGTGGATGTGCCTGTACCTCCATCTCCTACTCCTCTAGGGCATTTTCTACTTTTACATAAATTTATTAATTGGGCTTCAATCTCCAACCAGGCTCAACCCAACCCAAGGGCTACGCTTGGGCTTAAGAAGTCGGTCTTAATACGAAAAAGATTAGATGATAGAAATTTGCTAGCAAATCTGTGTTTAAGCTTTTGTTTTGTAAAAGAATACCCAAAGAAGCCACATAAATTAATCAAAATGAAAGTCGTCTTTGGATAG 1872 44.39 MAPISIMFLLFFLNSMGVRAQTAKPKLIELGSSLSPTNGSSSWVSPSGHFAFGFYPQDTGFAVGVWLVGQSGKTVVWTANRDDPPVSSNTALEFTRNGKLLLRTGPGEEVSIADVAESSASASMLDSGNFVLFGDNSSFIIWQSFQHPTDTLLGGQNLSNILSSSKTESSAIGATLDVDGVFRLYSHSFGNSNISSVSIMWSAFKNPCDVKGLCGVNGLCSSNGTNANCSCVPGFVSINREKTLSENAMEEFTLRSFSYNDLEKATDGFREELGRGPFGAVYKGTIAQGNQTIAVKRLEKVVEEGEREFQAEMTIIGRTHHRNLVRLLGFCMQGSKKLLVYEYMSNGSLADLLFNGEKRPIWRERVRIALDVARGIFYLHEECEVHIIHGDIKPKNILLDDSWTAKLSDFRLARLLRPNQTGTISRFGGSSRGYSAPERQKRMLISVEADVYSFGVVLLEIVCCRSNLDINVSTGDEILLCSWVYSCFVARELEKLVEGAEVNMKTLERMVKVGLLCIQDDPSLRPTMKNVILMLEGTVDVPVPPSPTPLGHFLLLHKFINWASISNQAQPNPRATLGLKKSVLIRKRLDDRNLLANLCLSFCFVKEYPKKPHKLIKMKVVFG* 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21594543 21610681 - Vvi4g1249 Vvi4g1249 786028

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1249 623 SUPERFAMILY Protein kinase-like (PK-like) 245 536 IPR011009 -
Vvi4g1249 623 Gene3D Transferase(Phosphotransferase) domain 1 344 546 - -
Vvi4g1249 623 SMART blect_4 34 148 IPR001480 -
Vvi4g1249 623 PANTHER S-RECEPTOR KINASE-LIKE PROTEIN 245 550 - -
Vvi4g1249 623 PANTHER S-RECEPTOR KINASE-LIKE PROTEIN 174 244 - -
Vvi4g1249 623 PANTHER S-RECEPTOR KINASE-LIKE PROTEIN 5 173 - -
Vvi4g1249 623 ProSiteProfiles Bulb-type lectin domain profile. 28 145 IPR001480 -
Vvi4g1249 623 Gene3D Phosphorylase Kinase; domain 1 233 343 - -
Vvi4g1249 623 SMART serkin_6 267 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1249 623 Pfam S-locus glycoprotein domain 175 237 IPR000858 GO:0048544
Vvi4g1249 623 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 174 244 - -
Vvi4g1249 623 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 245 550 - -
Vvi4g1249 623 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 5 173 - -
Vvi4g1249 623 Gene3D - 26 147 IPR036426 -
Vvi4g1249 623 CDD STKc_IRAK 273 537 - -
Vvi4g1249 623 Pfam Protein tyrosine and serine/threonine kinase 269 533 IPR001245 GO:0004672|GO:0006468
Vvi4g1249 623 ProSiteProfiles Protein kinase domain profile. 267 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1249 623 Coils Coil 490 510 - -
Vvi4g1249 623 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 158 IPR036426 -
Vvi4g1249 623 Pfam D-mannose binding lectin 74 159 IPR001480 -
Vvi4g1249 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 387 399 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1249 - - - vvi:100264417 615.535
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1249 Vvi18g1290 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1249 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031886 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76596 PF07714 PK_Tyr_Ser-Thr 7.70E-44 CL0016 Vvi PK