Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1252 ATGGAGAAGCTCTCTCAGCTCCGCTCTGCAGTGGCTGGTCTTGATCAGATCAGCGAGAATGAGAAATCCGGATTCATTAACCTCGTCTCTCGCTATCTCAGTGGTGAAGCGCAGCACATTGAATGGAGCAAGATCAAGACTCCTACTGATGAAGTGGTGGTTCCTTATGATACTTTAGCACCCACTCCTGAAGATTCAGTTGAAACCAAGAAGCTTTTGGACAAACTTGTTGTGTTAAAGCTCAATGGAGGGTTGGGAACAACAATGGGTTGTACTGGTCCCAAATCGGTAATAGAAGTTCGCAATGGATTGACATTTCTTGATTTAATTGTCATACAGATTGAGAATCTCAACAACAAGTATGGGTGCAAAGTTCCTCTGCTTCTGATGAATTCATTCAACACACATGATGATACGCTGAAGATTGTACAAAAATATGAGAAATCAAACATTGAGATCCATACTTTTAATCAGAGCCAGTACCCTCGTGTGGTTGTTGATGACTTTAGCCCACTGCCGTCCAAAGGAAATACTGGAAAAGATGGGTGGTACCCTCCTGGGCATGGTGATGTGTTCCCAGCCTTGATGAACAGTGGCAAGCTTGAAAAATTATTGTCACAGGGCAAGGAGTATGTCTTTGTCGCCAATTCAGATAACTTGGGTGCTGTGGTTGACCTGAAAATCTTAAATCATTTGATCAAAAACAAGAACGAATACTGTATGGAGGTGACACCCAAAACCTTGGCTGATGTGAAGGGTGGTACCCTCATTTCTTATGAAGGGAAGGTTCAGCTCCTGGAAATTGCACAGGTCCCAGATGAACATGTCAATGAATTCAAGTCAATAGAGAAGTTCAAAATTTTCAATACAAACAATTTGTGGGTGAACTTGAATGCAATTAAGAGGCTTGTGGAGGCTGATGCACTTAAGATGGAGATTATTCCAAACCCCAAGGAAGTGGATGGTATCAAAGTTCTTCAGTTGGAAACCGCGGCTGGTGCAGCAATTAGGTTCTTCGATAATGCTATTGGTATCAATGTTCCCCGCTCCCGTTTTCTTCCTGTGAAGGCAACTTCGGATTTGCTTCTTGTCCAGTCTGATCTTTACACCTTATCTGATGGATTTGTTGTCCGAAACAAAGCTAGAAAGAATCCTGAAAATCCTGTTATTGAGTTGGGGCCTGAATTTAAGAAGGTTGGCAACTTCTTGAGTCGATTCAAGTCAATCCCTAGTATCATTGAGCTGGATAGTCTTAAGGTAGCTGGTGATGTATGGTTTGGGTCTGGTGTTATTCTCAAGGGGAAGGTGACTATTGAAGCTAAGGCTGGGGTGAAATTGGAAATACCCAATGGAGCTGTAGTTGCAAACAAGGTGATCAATGGTCCTCAGGACATCTAA 1398 42.7 MEKLSQLRSAVAGLDQISENEKSGFINLVSRYLSGEAQHIEWSKIKTPTDEVVVPYDTLAPTPEDSVETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNNKYGCKVPLLLMNSFNTHDDTLKIVQKYEKSNIEIHTFNQSQYPRVVVDDFSPLPSKGNTGKDGWYPPGHGDVFPALMNSGKLEKLLSQGKEYVFVANSDNLGAVVDLKILNHLIKNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLNAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSDLYTLSDGFVVRNKARKNPENPVIELGPEFKKVGNFLSRFKSIPSIIELDSLKVAGDVWFGSGVILKGKVTIEAKAGVKLEIPNGAVVANKVINGPQDI* 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21784490 21800688 + Vvi4g1252 Vvi4g1252 786031

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1252 465 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 355 IPR029044 -
Vvi4g1252 465 CDD UGPase_euk 82 371 IPR016267 GO:0003983|GO:0006011
Vvi4g1252 465 PIRSF UDPGP 1 465 IPR016267 GO:0003983|GO:0006011
Vvi4g1252 465 SUPERFAMILY Nucleotide-diphospho-sugar transferases 11 438 IPR029044 -
Vvi4g1252 465 PANTHER - 2 465 IPR016267 GO:0003983|GO:0006011
Vvi4g1252 465 Gene3D Hexapeptide repeat proteins 356 465 - -
Vvi4g1252 465 Pfam UTP--glucose-1-phosphate uridylyltransferase 24 433 IPR002618 GO:0070569
Vvi4g1252 465 PANTHER UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE 2 465 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1252 K00963 UGP2, galU, galF; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] - vvi:100253896 904.82
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1252 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004719 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 41