Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1261 ATGTATCCAAAACAAATAAAAAAAAAAGGCCATTCTAAACAACCATGGGATTTCGGAAGTATTGAGTGGAGAATGAAAATATATTTATACAAACTTTTCAAAGCAATGTGCATAAAAGATAGAGAAAGCTTATCTCTAATGGCTTCAACTACTTTACTGTTTCTTCTTCTCTCTGCATTTTGTGTTGCAGCAGTAGCCCAGCAAAGAGGTTCTAATATAAGTCGAGGTTCTTCTCTAACACCCACTTCCAACTCCTTTTGGCTGTCACCCAACCGCCTATATGCCTTTGGATTCTACAAGCAGGGTAATGGCTATTATCTAGGAATTTTTCTCATCGGAATTCCCCAGAAAACTGTAGTGTGGACAGCCAACCGAGATGATCCCCCAGTCCCCAGCACCGCTACCTTGCACTTTACTAGTGAAGGCAGGCTCAGGTTGCAAACGCAGGGTCAGCAAAAGGAGATTGCCAATTCTGCTTCAGCTTCTTCTGCTTCCATGCTGGATTCGGGAAATTTCGTGCTCTACAATTCTGATGGGGACATCGTATGGCAGAGTTTTGATCTCCAAACTGATACCCTTTTACCAGGTCAACGTCTCTCGGCAGGGAAAGAGCTGTTTTCTAGTGTGTCGGAAACTAACCCCTCAACTGGAATGTTTCGCCTGAAGATGCAAAATAATGGGAACCTTGTGCAATACCCGGTGAAAACTCCAGACGCGCCAACATATGCTTATTATACATCAGAGACAGGTGGAGTAGGAGATAATGTGACCCTACTTCTTGATGGTGGAGGTCATCTTTACTTGCTCAATACTAATGGCTCCAATATATTGAATATAACAGATGGAGGTTATGACAATGAAAACCTCCATCTTCTGAAAATCGATCCGGATGGGATCTTCAAACTGTACTCACATGATTCGGGTCAGAACGGCAGCTGGTCAATTTTATGGAGGTCTTCAAACGACAAGTGTGCTCCTAAGGGTCTATGCGGGGTTAATGGGTTTTGTATTCTGCTTGATGAGAGGCCTGACTGTAAGTGTCTTCCTGGATTTTATTTTGTTGTGGAAAGCAACTGGAGTTCGGGCTGCATAAGAAATTTCAAAGAAGAAATTTGCAAAAGCAATGATGGAAGAACCAAATACACCATGTCAACATTGGAGAACACCAGGTGGGAAGAGGCTTCCTACTCCAATCTATCAGTACCAACCCAAGAAGATTGTGAACAAGCCTGCTTGGAGGACTGTAACTGTGAAGCTGCCCTGTTTGAGGATGGAAGTTGCAAAAAACAACGACTTCCTTTGCGATTTGGGAGAAGATCGCTAGGTGATTCAAACATACTCTTTGTGAAGATGGGTTCCCCAGAAGTTTCTCCACATGGAAGCAAGAAAGAGCTCCGGACGGACATCCTAGTTATCAGTGTTTCATTAGCATCTTTTGCACTCATTATCTTGGCCATATCTGGAGTTCTAATTCGTAGAAAGAATCTATGGGCATACAAGAAGATCTCAGAGACTGGGAATGTTGGATTGACTGAAGACGTTGCTCTGCGATCATTTACCTACATGGAACTTGAGAAGGTTACCGACGGTTTTAAGGAAGAGATTGGTAAGGGAGCTTCTGGGACTGTTTATAAGGGAGCCATATCAAACGGCCGGAGGATTGTAGCAGTCAAGAAACTAGCGAAGGAGTTGGCTGAAGGGCAAAGAGAATTTCAAAATGAATTAAAAGTAATTGGGAGAACACACCACAGGAATCTCGTCAGATTGCTAGGTTACTGCCTTGACGGTCAAAACAAGCTTTTGGTATATCAATACATGAGCAATGGATCACTTGCAGATTTGCTCTTCACACCTGGAAAACAACCTCGCTGGATTGAGAGAATGGGAATTGCTCTCAACGTAGCAAGAGGCATTCTCTATCTGCATGAAGAGTGTGAGACACAGATAATACATTTGTGA 1959 42.98 MYPKQIKKKGHSKQPWDFGSIEWRMKIYLYKLFKAMCIKDRESLSLMASTTLLFLLLSAFCVAAVAQQRGSNISRGSSLTPTSNSFWLSPNRLYAFGFYKQGNGYYLGIFLIGIPQKTVVWTANRDDPPVPSTATLHFTSEGRLRLQTQGQQKEIANSASASSASMLDSGNFVLYNSDGDIVWQSFDLQTDTLLPGQRLSAGKELFSSVSETNPSTGMFRLKMQNNGNLVQYPVKTPDAPTYAYYTSETGGVGDNVTLLLDGGGHLYLLNTNGSNILNITDGGYDNENLHLLKIDPDGIFKLYSHDSGQNGSWSILWRSSNDKCAPKGLCGVNGFCILLDERPDCKCLPGFYFVVESNWSSGCIRNFKEEICKSNDGRTKYTMSTLENTRWEEASYSNLSVPTQEDCEQACLEDCNCEAALFEDGSCKKQRLPLRFGRRSLGDSNILFVKMGSPEVSPHGSKKELRTDILVISVSLASFALIILAISGVLIRRKNLWAYKKISETGNVGLTEDVALRSFTYMELEKVTDGFKEEIGKGASGTVYKGAISNGRRIVAVKKLAKELAEGQREFQNELKVIGRTHHRNLVRLLGYCLDGQNKLLVYQYMSNGSLADLLFTPGKQPRWIERMGIALNVARGILYLHEECETQIIHL* 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21957770 21968697 - Vvi4g1261 Vvi4g1261 786040

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1261 652 ProSitePatterns Protein kinases ATP-binding region signature. 535 559 IPR017441 GO:0005524
Vvi4g1261 652 SMART blect_4 78 189 IPR001480 -
Vvi4g1261 652 Gene3D Transferase(Phosphotransferase) domain 1 606 652 - -
Vvi4g1261 652 SUPERFAMILY alpha-D-mannose-specific plant lectins 114 246 IPR036426 -
Vvi4g1261 652 Pfam Protein tyrosine and serine/threonine kinase 531 644 IPR001245 GO:0004672|GO:0006468
Vvi4g1261 652 Gene3D Phosphorylase Kinase; domain 1 504 605 - -
Vvi4g1261 652 PANTHER RUST RESISTANCE KINASE LR10-RELATED 69 651 IPR045874 GO:0004672
Vvi4g1261 652 Gene3D - 64 187 IPR036426 -
Vvi4g1261 652 Gene3D - 188 314 IPR036426 -
Vvi4g1261 652 ProSiteProfiles PAN/Apple domain profile. 372 453 IPR003609 -
Vvi4g1261 652 SUPERFAMILY alpha-D-mannose-specific plant lectins 215 313 IPR036426 -
Vvi4g1261 652 ProSiteProfiles Bulb-type lectin domain profile. 190 315 IPR001480 -
Vvi4g1261 652 SUPERFAMILY Protein kinase-like (PK-like) 514 651 IPR011009 -
Vvi4g1261 652 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE LECRK3 69 651 - -
Vvi4g1261 652 ProSiteProfiles Protein kinase domain profile. 529 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1261 652 ProSiteProfiles Bulb-type lectin domain profile. 64 187 IPR001480 -
Vvi4g1261 652 SMART tyrkin_6 529 652 IPR020635 GO:0004713|GO:0006468
Vvi4g1261 652 Pfam D-mannose binding lectin 118 201 IPR001480 -
Vvi4g1261 652 Pfam S-locus glycoprotein domain 285 351 IPR000858 GO:0048544
Vvi4g1261 652 CDD EGF_CA 322 352 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1261 - - - vvi:100265971 1083.17
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1261 Vvi18g1252 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1261 . Blo16g00530 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000157 2 9 11 4 5 1 3 7 6 4 4 7 6 6 11 6 7 10 2 8 10 8 2 10 9 9 7 5 3 9 191
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76598 PF07714 PK_Tyr_Ser-Thr 2.20E-20 CL0016 Vvi PK