Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1263 ATGCTCGATTCAGGGAATTTTGTGCTCTATAATTCCAAACAAGAGATCATATGGCAGAGTTTTGATCACCCAACTGACACCCTTTTATCAGGTCAGCGTCTCCAGGCGGGAGCAGAGCTCGTCTCCAGTGTCTCAGAAAAAAACTACTCAACTGGTATGTTCCAGTTGAAGATGCAGCATGATGGAAACCTTGTACAGTACCCAACAAATGTTCCAGAAGTAGTTGAATATGCTTATTGGGCATCTGACACACATGGAGAAGGAGATAATGCAACACTAAATCTTGATGCTGATGGCTATCTGTACTTACTCAATGCCACCGGCTTCAATATAAAGAACCTAACAGATGGAGGAGGTCCACAGGAAGAAACAATCTATCTTATGAAAATTGATGTGGATGGGATTTTCAGATTGTATTCTCGGGGTTTGGATCAGAGCAGCGAATGGTCAGTGGAATGGTCATCCTCAATTGATAAATGCGATCCTAAAGGCTTGTGTGGCCTGAATAGTTATTGCAGTTTAATGGATCAAGAGCCTGTTTGCACTTGTCTCCCTGGCTTTGATTTTGTTGATAAAAGCCAGAAAAGTTGGGGCTGCGAAAGGAACTTTGTTGCAGAAGCCTGCAAGAACAACGATGGAAGCATCGAATACAGTATCGAATCACTGCAGAGTGTCATGTGGGAAGATGATTCATATTTGGTCATTTCGTCAAGAACTGAAGAGAACTGCATAGAAGCCTGCTTGGAAGACTGCAATTGTGAAGCTGCATTATTCAAAAACAGCGAGTGCAGAAAGCAAAAGCTTCCTTCGAGATTTGGAAGAAGATCGCTGAGTGATGAAACAACAGCTTTTGTCAAGGTAGGCACGTCCACCGCAACCCGACGTGCACCCAAAGAAAGCAAAAAAGAGTGGCGAAAGGACATCCTAATCATAAGCTGTTCACTTCTTGCTCTAGCGTGCATTGTCTTAGCGATATCTGGACTTCTTATTTACAGAAATCGTGGCTGCACATTGAAAAAAGTATCTAAGCAAGGGAATTTGCGTTTGACAGAGGGTGCCACATTGCAATCATTTACTTACCAAGAGCTTAAAAAAGTGACCAATGGCTTTACGGAAGTGCTTGGTAAGGGAGGATTTGGTACCGTTTATAAGGGAGCCATGTCAAACGGACAGAGGCTAGTAGCGGTAAAGAAACTCAACGTCTCCACAGGGGAAAAGGAGTTTCGTACTGAGATGAAAGCACTTGCGGGAACACATCACCGGAACCTGGTCCAATTGCTGGGTTATTGCCTTGAAGGTCCAAACAGATTTCTGGTGTATGAATATATAAGCAATGGTTCCCTTGCAAATTTACTATTCACACCAGCTAAATGGCCTCGTTGGGATGAAAGGATGGGAATTGCGCAGAATGTAGCAAGAGGTATCCTCTATCTGCATGAAGAATGTGAGACTCAGATTATGCATTGCGACATAAAACCACAGAACATACTTATGGATGAGTATGGGGGTGCAAAAATTAGTAGCTTTGGATTGGCAAAAAGGCTGAAGCATGGCCAGACCAGCACCCTTGCTGAGATCCGAGGAACAAAGGGTTATATTGCACCGGAGTGGTTCCGAAACCAGCCGGTGACAGTTAAAGTAGACGTGTACAGCTTTGGAATCATGTTGTTGCAGATCATATGTTGCCGAAAGAATTTCGACTTGAGCCTTCCTGACGAAGAAATTGGCCTTAATGAATGGGTTAGTCATTGTTTTGAGGCAGGTGAGCTGGGTAAACTAGTGGATGATGAAGAGGTGGACAAACGAGAACTGGAGAGGATGGTTAAAGTGGGACTTTGGTGCATCCAGGATGAGCCGCTGTTCCGTCCCTCAATAAAGAAGGTTCTTCTGATGTTGGAAGGCAGTATTATAGACATCCCTGTACCTCCCAGTACTTCTACTACTTATTTTAGTGCCGTCTAG 1962 43.88 MLDSGNFVLYNSKQEIIWQSFDHPTDTLLSGQRLQAGAELVSSVSEKNYSTGMFQLKMQHDGNLVQYPTNVPEVVEYAYWASDTHGEGDNATLNLDADGYLYLLNATGFNIKNLTDGGGPQEETIYLMKIDVDGIFRLYSRGLDQSSEWSVEWSSSIDKCDPKGLCGLNSYCSLMDQEPVCTCLPGFDFVDKSQKSWGCERNFVAEACKNNDGSIEYSIESLQSVMWEDDSYLVISSRTEENCIEACLEDCNCEAALFKNSECRKQKLPSRFGRRSLSDETTAFVKVGTSTATRRAPKESKKEWRKDILIISCSLLALACIVLAISGLLIYRNRGCTLKKVSKQGNLRLTEGATLQSFTYQELKKVTNGFTEVLGKGGFGTVYKGAMSNGQRLVAVKKLNVSTGEKEFRTEMKALAGTHHRNLVQLLGYCLEGPNRFLVYEYISNGSLANLLFTPAKWPRWDERMGIAQNVARGILYLHEECETQIMHCDIKPQNILMDEYGGAKISSFGLAKRLKHGQTSTLAEIRGTKGYIAPEWFRNQPVTVKVDVYSFGIMLLQIICCRKNFDLSLPDEEIGLNEWVSHCFEAGELGKLVDDEEVDKRELERMVKVGLWCIQDEPLFRPSIKKVLLMLEGSIIDIPVPPSTSTTYFSAV* 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21979115 21981077 - Vvi4g1263 Vvi4g1263 786042

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1263 653 SUPERFAMILY Protein kinase-like (PK-like) 353 633 IPR011009 -
Vvi4g1263 653 Gene3D Transferase(Phosphotransferase) domain 1 443 640 - -
Vvi4g1263 653 ProSiteProfiles Bulb-type lectin domain profile. 25 151 IPR001480 -
Vvi4g1263 653 SUPERFAMILY alpha-D-mannose-specific plant lectins 1 67 IPR036426 -
Vvi4g1263 653 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 648 - -
Vvi4g1263 653 Pfam S-locus glycoprotein domain 124 188 IPR000858 GO:0048544
Vvi4g1263 653 ProSitePatterns Protein kinases ATP-binding region signature. 374 398 IPR017441 GO:0005524
Vvi4g1263 653 Pfam D-mannose binding lectin 1 36 IPR001480 -
Vvi4g1263 653 ProSiteProfiles Protein kinase domain profile. 368 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1263 653 ProSiteProfiles PAN/Apple domain profile. 208 289 IPR003609 -
Vvi4g1263 653 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 648 - -
Vvi4g1263 653 Pfam Protein kinase domain 372 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1263 653 SMART blect_4 25 151 IPR001480 -
Vvi4g1263 653 Gene3D - 23 151 IPR036426 -
Vvi4g1263 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 486 498 IPR008271 GO:0004672|GO:0006468
Vvi4g1263 653 Gene3D Phosphorylase Kinase; domain 1 341 442 - -
Vvi4g1263 653 SMART serkin_6 368 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1263 653 SUPERFAMILY alpha-D-mannose-specific plant lectins 48 108 IPR036426 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1263 - - - vvi:100253884 1324.69
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1263 . Blo16g00531 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000157 2 9 11 4 5 1 3 7 6 4 4 7 6 6 11 6 7 10 2 8 10 8 2 10 9 9 7 5 3 9 191
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76599 PF00069 Pkinase 1.60E-46 CL0016 Vvi PK