Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1264 ATGGGCTTGGTTGGTGTTGAGAGTGGTGAAGAGGGTATAGGGCATTCAGAGCCACCTGACCCTGATGTTCTAGAGATTGATCCTACTTCACGGTACATTCGGTTCAAAGACATTCTCGGGAAAGGCGCATTCAAGACTGTTTACAAGGCATTCGATCAAGTTGATGGAATTGAAGTAGCATGGAACCAAGTTCGCATTGATGAGGTATTACAGTCACCAGATGAGCTGGAAAGGCTGTATTCTGAAGTGCATCTCTTGAAATCATTGAAGCATAAGAACATAATAAAGTTTTATAATTCATGGATTGATGATGGGAACAAGACTGTAAATATCATTACCGAGTTGTTCACCTCGGGTAGCCTTAGACAGTACCGTAAGAAGCATAAGAAGGTTGACATGAAGGCAGTCAAGGGATGGGCAAGGCAAATTTTGATGGGTTTGAACTACCTTCACAATCACAATCCGCCAATTATACATAGAGACCTGAAATGTGATAACATTTTTATTAATGGGAACCAAGGGGAAGTTAAAATAGGAGATCTTGGCCTAGCGACTGTCATGCAACAGGCTAATGCAAGAACTGTGATAGGAACTCCTGAGTTCATGGCGCCTGAGCTGTATGATGAGAATTACAATGAGTTAGCTGATATATATTCCTTTGGGATGTGCATGCTGGAGATGGTAACACTTGAGTATCCTTACAGTGAATGCAGGAACTCAGCTCAGATATACAAGAAGGTTTCAAATGGAATAAAACCTGCCGCCCTGTCTAAAATAAAAGATCTAGAAGTTAAAATGTTTATAGAGAAGTGTCTAGTACCTGCATCTCAAAGATTGTCAGCAAAGAAGCTTCTGAATGATCCCTTCTTCCAAGTTGATGGATTGACTAAGAATCATCCTTTGCAACTTCCTGATATTCTACCCATTATCACCTCTATGGATAATTCTGTTGATGGAGGGCCCTATTCATTATGCATGGAGGTTCAAAGAGCAAAAGGAGGCAATTTTTTCCTGTTGAAAGGCGAGGGAAATGATGAGAACTCTATATCACTAATATTAAGAATAGCTGATCAGAATGGTCGCTTGAGAAATATCCATTTCATGTTCTACCTTGATAGTGATACAGCCCTCTCGGTTTCAAGTGAAATGGTGGAACAACTGGAACTAGCAGACCAGAATGTCACGTTCATTGCAGAGTTGATCGATTTGTTATTAATTATGCTAATACCAACCTGGAAACCTTGTGTCCCAATTGACCATCTGGTTGCTTTGAATAGAATGCAAACCTCTAATGGTCATCATGAGGACTTACAATGTCCAGAACATGGAGAGTGCTTGGTGGGATCATTCGAAGGTGTTTGTGAAACAGATAATCTTTTAAGCCCCCATGTCTACCCCAACTCAACTTCTTTTGAGGGATACATTGAGACAATGCAGGAAAACCCTAAACATTTGAGTCTTGATGAGATCAAGACTCATGCTGATTTAGGGCTTCCAAGCTCAGCCACAGTAGAGGATCATGGTTCTGATATGTCATATCTGCAATACCACGAGGCAGTTAAGGAAATAGCCAAGAGAAGACAAGAAGCTATCAGGGAGACAAAGAAAAGGTTGTCACAGAAAAGGATAGAGTCAAGTGGGTTTTTATTCTTAATTAAATTGGCTTGGGAAGCGGATTCCCTCTCAAAGGCAAGGAGATAA 1701 40.8 MGLVGVESGEEGIGHSEPPDPDVLEIDPTSRYIRFKDILGKGAFKTVYKAFDQVDGIEVAWNQVRIDEVLQSPDELERLYSEVHLLKSLKHKNIIKFYNSWIDDGNKTVNIITELFTSGSLRQYRKKHKKVDMKAVKGWARQILMGLNYLHNHNPPIIHRDLKCDNIFINGNQGEVKIGDLGLATVMQQANARTVIGTPEFMAPELYDENYNELADIYSFGMCMLEMVTLEYPYSECRNSAQIYKKVSNGIKPAALSKIKDLEVKMFIEKCLVPASQRLSAKKLLNDPFFQVDGLTKNHPLQLPDILPIITSMDNSVDGGPYSLCMEVQRAKGGNFFLLKGEGNDENSISLILRIADQNGRLRNIHFMFYLDSDTALSVSSEMVEQLELADQNVTFIAELIDLLLIMLIPTWKPCVPIDHLVALNRMQTSNGHHEDLQCPEHGECLVGSFEGVCETDNLLSPHVYPNSTSFEGYIETMQENPKHLSLDEIKTHADLGLPSSATVEDHGSDMSYLQYHEAVKEIAKRRQEAIRETKKRLSQKRIESSGFLFLIKLAWEADSLSKARR* 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21993961 21997860 + Vvi4g1264 Vvi4g1264 786043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1264 566 Coils Coil 521 541 - -
Vvi4g1264 566 CDD STKc_WNK 31 290 - -
Vvi4g1264 566 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 4 307 - -
Vvi4g1264 566 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 322 514 - -
Vvi4g1264 566 MobiDBLite consensus disorder prediction 1 25 - -
Vvi4g1264 566 SMART serkin_6 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1264 566 ProSiteProfiles Protein kinase domain profile. 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1264 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Vvi4g1264 566 SUPERFAMILY Protein kinase-like (PK-like) 34 291 IPR011009 -
Vvi4g1264 566 Gene3D Transferase(Phosphotransferase) domain 1 116 296 - -
Vvi4g1264 566 Pfam Protein kinase domain 36 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1264 566 Gene3D - 347 411 - -
Vvi4g1264 566 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK6-RELATED 4 307 - -
Vvi4g1264 566 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK6-RELATED 322 514 - -
Vvi4g1264 566 Gene3D Phosphorylase Kinase; domain 1 18 114 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76600 PF00069 Pkinase 1.50E-53 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1264 K08867 - vvi:100259251 1019.99