Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1266 ATGGTTTGTGCACCTTGTGATGTAATCCACCGACCAACCGAACCCTCGGTGGTCCCCGCTTCCCCCACAAATACTCCTCATTGCTTTGTGGGCCCCACGATTCTCCCTCATTTCCACCACTCCCTCCTCCTTCAATCCCAACGCTCCATCCCCTCGGATAACTTGTTTATTACAGTTCCCAGCCTTTTCCGTTGCCCGATATCTCTGGACGTCATGAAGTCCCCGGTGAGTCTCTGCACCGGCGTCACCTATGACCGCTCGAGCATTCAGAGGTGGCTCGACAACGGCAACAACACTTGTCCGGCCACTATGCAGGTGCTCCACAGTAAGGACTTTGTGCCCAACCACACCCTACAACGCCTCATCCAGATCTGGTCCAACTCGGTCCGCCACCGCTCCAACTCGCCCGACTCCCCCATCCAGCTCATTATTTGTTTCGCGAGAGACGTTTCGGTGACCGAGAAGGCTCTGAAACTGCTGGAAATGGCATCATCGTGCAAAGAGGGAAAATCCGAGATATGTGAGAACTCCGACTGCGTATCTGCCATAGTGCAGAAGATGTTGAAGGTGTCGAGCACGGCGACGGAGCACGCCGTGACGATACTGTGGAGCGTGTGCTATTTGTCAAGAGACGACAGGGCTCAGAGCACGGTCACCCAGAACAACGGATTGACCAAGATTTTGGTGCTTATGCAGAGCAATTGCTCGCCGGCGGTGAGGCAACTAGCCGGAGATTTGTTGAAAATATTCAGAGTGAGCTCCAAATCGTGTCTGTCAAGCTATGATACCAAAACAACCCATATCATGCCTTTTTGA 816 53.19 MVCAPCDVIHRPTEPSVVPASPTNTPHCFVGPTILPHFHHSLLLQSQRSIPSDNLFITVPSLFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHSKDFVPNHTLQRLIQIWSNSVRHRSNSPDSPIQLIICFARDVSVTEKALKLLEMASSCKEGKSEICENSDCVSAIVQKMLKVSSTATEHAVTILWSVCYLSRDDRAQSTVTQNNGLTKILVLMQSNCSPAVRQLAGDLLKIFRVSSKSCLSSYDTKTTHIMPF* 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22059054 22060769 + Vvi4g1266 Vvi4g1266 786045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1266 271 Gene3D - 140 260 IPR011989 -
Vvi4g1266 271 SUPERFAMILY RING/U-box 52 127 - -
Vvi4g1266 271 Pfam U-box domain 59 127 IPR003613 GO:0004842|GO:0016567
Vvi4g1266 271 ProSiteProfiles U-box domain profile. 58 132 IPR003613 GO:0004842|GO:0016567
Vvi4g1266 271 CDD RING-Ubox_PUB 63 105 IPR045210 -
Vvi4g1266 271 SMART Ubox_2 62 125 IPR003613 GO:0004842|GO:0016567
Vvi4g1266 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 139 IPR013083 -
Vvi4g1266 271 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 149 271 - -
Vvi4g1266 271 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 53 138 - -
Vvi4g1266 271 SUPERFAMILY ARM repeat 145 247 IPR016024 -
Vvi4g1266 271 PANTHER WDSAM1 PROTEIN 149 271 IPR045185 GO:0061630
Vvi4g1266 271 PANTHER WDSAM1 PROTEIN 53 138 IPR045185 GO:0061630
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1266 - - - vvi:100264434 240.35
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1266 . . Bda04g00334 . . . . . Cmo02g00625 . Cma03g01083 Cma07g00789 Car03g00973 Car07g00775 Sed10g0492 Cpe19g00539 Cpe10g00346 Bhi03g01378 Tan03g1327 Cmetu08g0065 . Hepe04g1125 . . Cla01g01528 Cam01g1597 Cec04g1242 Cco04g1311 Clacu01g1622 Cmu01g1508 Cre04g1187 . . Cone6ag1295 . Lsi01g01136 . . Cme08g01071 . . . . . Bpe06g00274 . . . . Cmo07g00812 . . . . Cpe05g01067 . Bhi10g02332 Tan07g0873 Cmetu11g1820 . Hepe08g1253 . . Cla02g00066 Cam02g0068 Cec02g0070 Cco02g0063 Clacu02g0067 Cmu02g0066 Cre02g0405 Lsi10g00713 Csa06g02795 Chy02g01040 Cme11g00070
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002606 1 2 1 0 1 2 3 2 2 1 2 2 3 2 2 2 2 4 3 2 2 3 2 3 2 2 2 1 2 1 59