Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1267 ATGCGTTCTGAACCCTCCGCCAATTGGTCTGATGAGGGAGAAGATGATGTGTTCTTTGATTCTATGGATCACCTGTCATGTGAAGAGTCTGTTCGTGCTAAAGAGGAGTTAGGCTGTGGTAAGTTGGATTATGAAATTTGGAGGAATGAGCCACGGAGTGTTAGGGAAAGAAGGGAAAGTTTTCTACGCGGAATGGGGTTTGTTGAATTTGTTCCTGAGCATGACAAGCCCTTTGGAGACCCTCCAGAGATGGTGGAATTGGGAAGGATTACAGAATGCAGCGGAGCAGTCTCGAGTTCTTCGGTTTCATCGATTAATTGTACAGAGGAAAATTCAGTTTGTAGCGGAAGAGAAGGGGATGTTGGAGCCAATTGTATGGTTGATGCATTGAACCAACAGCAGTCAGAGAAACAGAATATAGATTTTGAGGGGGAGACTCGGGGGCTTTTGCCTTCTGCCCAAGAGTTTGAATGTAATGAAGGGCAGGCTTGTGTAGAAGGATGCAAGAATCTTGGTATGGATAAGAAAACAAGGAGTTGGTGGAAACGCTTCATAAGCAAGAGGAAAGGAAGAGATGCTGCCTCTGCATCTCAGGTTTCAAAGCAAACTTCTGAAACACCCAAGATAAATCAAATGAAGGTGAGGCAAAACAAGAAGAGGTGCATGGAATTCACTGCACTCTGTATTGGACAAGAGATTCAAGCTCACAAGGGCTTCATCTGGACGATGAAGTTTAGTCCAGATGGCCAGTATCTGGCCAGTGGTGGTGAAGATGGCGTGGTTCGCATATGGTGTGTTACATCAACAGATGCCTCTTGCAAATATCTTACCACCGAAGGTAATTTTGGTTGTGAACCAAGTTATGCTCCAGTTGTTATCCCTGATAAGATTTTTCAGATTGAGGAGTCGCCACTGCAAGAGTTCCATGGCCATGCCAGTGATGTCTTGGATCTGGCTTGGTCCAAATCTAATTCTCTCCTTTCCTCTTCCATGGATAAAACTGTTCGGTTATGGCAAGTGGGGCATGACGAATGTCTTAATGTTTTCAGACACAATAACTATGTGACATGCATTCAGTTCAATCCTGTTGATGACAATTATTTCATAAGCGGTTCCATAGATGGAAAAGTTCGAATTTGGGGAGTGTCAGAGAGGCGAGTTGTTGATTGGGCTGATGTTCGAGATGTGATAACGGCTATATGTTACCAGCCAGATGGAAAAGGCTTCATAGTTGGTTCTGTAACTGGCACTTGCTGCTTTTACAATGCATCAGGCAACCATCTTCAGCTGGATGCAAAGGTAAACTTCCATGGTAGAAAGAAAACCTCTGGCAACAAGATTACTGGCATACAGTTTTCACAGGAAGAATCTCAAAAAGTTATGATAACTTCTGAAGATTCCAAGCTTCGGATTCTTGATGGGATTGATGTTGTCTACAAATACAAAGGGCTTCGAAAGTCAGGAAGTCAGATGTCAGCTTCATTTACTTCAACTGGGAGACATATAGTCTCAGTTGGGGAGGACTCTCGTGTGTATGTGTGGAACTATGATGGCTTTTGTTCCCAGTCATCTAAACAAATGAAATCTGTCCAGTCCTGTGAGCATTTCTTCTTTGAAGGTGTCTCTGTTGCAATACCTTGGTCAGACACTGGAGCGGAGAAGAAGGGCTTAGGTAGTGACAGTCTCCGGCAAAGTCCGCCGACACAGGACCACCTAGAGGCTACTTCCTGGATCAGAGATTCCGAACGGTTTTCTCTTGGTAATTGGTTCTCCATGGATGGCTCATGTAGAGGTGGAGCAACATGGCCTGAGGAGAAACTTCCCCTATGGGGTGCACCAGAACATGATCATCACCATCATGACCATCAGCAGCAGCAACAACACAACGATGTCCAGAACCATAATCACCTAGCTCTTTCTGAGGCGTGGGGCTTAGTGATTGCTACAGCAGGTTGGGATGGAACAATCAGGACATTCCACAACTACGGATTGCCAGTCAGGCTTTAG 2007 44.94 MRSEPSANWSDEGEDDVFFDSMDHLSCEESVRAKEELGCGKLDYEIWRNEPRSVRERRESFLRGMGFVEFVPEHDKPFGDPPEMVELGRITECSGAVSSSSVSSINCTEENSVCSGREGDVGANCMVDALNQQQSEKQNIDFEGETRGLLPSAQEFECNEGQACVEGCKNLGMDKKTRSWWKRFISKRKGRDAASASQVSKQTSETPKINQMKVRQNKKRCMEFTALCIGQEIQAHKGFIWTMKFSPDGQYLASGGEDGVVRIWCVTSTDASCKYLTTEGNFGCEPSYAPVVIPDKIFQIEESPLQEFHGHASDVLDLAWSKSNSLLSSSMDKTVRLWQVGHDECLNVFRHNNYVTCIQFNPVDDNYFISGSIDGKVRIWGVSERRVVDWADVRDVITAICYQPDGKGFIVGSVTGTCCFYNASGNHLQLDAKVNFHGRKKTSGNKITGIQFSQEESQKVMITSEDSKLRILDGIDVVYKYKGLRKSGSQMSASFTSTGRHIVSVGEDSRVYVWNYDGFCSQSSKQMKSVQSCEHFFFEGVSVAIPWSDTGAEKKGLGSDSLRQSPPTQDHLEATSWIRDSERFSLGNWFSMDGSCRGGATWPEEKLPLWGAPEHDHHHHDHQQQQQHNDVQNHNHLALSEAWGLVIATAGWDGTIRTFHNYGLPVRL* 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22096877 22101390 + Vvi4g1267 Vvi4g1267 786046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1267 668 MobiDBLite consensus disorder prediction 608 632 - -
Vvi4g1267 668 Gene3D - 221 540 IPR015943 GO:0005515
Vvi4g1267 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 308 340 - -
Vvi4g1267 668 Pfam WD domain, G-beta repeat 344 380 IPR001680 GO:0005515
Vvi4g1267 668 Pfam WD domain, G-beta repeat 303 338 IPR001680 GO:0005515
Vvi4g1267 668 Pfam WD domain, G-beta repeat 233 264 IPR001680 GO:0005515
Vvi4g1267 668 MobiDBLite consensus disorder prediction 192 212 - -
Vvi4g1267 668 MobiDBLite consensus disorder prediction 193 211 - -
Vvi4g1267 668 PRINTS G protein beta WD-40 repeat signature 252 266 IPR020472 -
Vvi4g1267 668 PRINTS G protein beta WD-40 repeat signature 326 340 IPR020472 -
Vvi4g1267 668 PRINTS G protein beta WD-40 repeat signature 368 382 IPR020472 -
Vvi4g1267 668 SMART WD40_4 427 473 IPR001680 GO:0005515
Vvi4g1267 668 SMART WD40_4 624 660 IPR001680 GO:0005515
Vvi4g1267 668 SMART WD40_4 226 265 IPR001680 GO:0005515
Vvi4g1267 668 SMART WD40_4 383 422 IPR001680 GO:0005515
Vvi4g1267 668 SMART WD40_4 474 515 IPR001680 GO:0005515
Vvi4g1267 668 SMART WD40_4 342 381 IPR001680 GO:0005515
Vvi4g1267 668 SMART WD40_4 301 339 IPR001680 GO:0005515
Vvi4g1267 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 348 380 - -
Vvi4g1267 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 308 348 IPR001680 GO:0005515
Vvi4g1267 668 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 12 668 - -
Vvi4g1267 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 233 264 IPR001680 GO:0005515
Vvi4g1267 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 233 264 - -
Vvi4g1267 668 PANTHER WD REPEAT DOMAIN 44 12 668 IPR040324 -
Vvi4g1267 668 MobiDBLite consensus disorder prediction 609 627 - -
Vvi4g1267 668 SUPERFAMILY WD40 repeat-like 231 659 IPR036322 GO:0005515
Vvi4g1267 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 348 390 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1267 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - vvi:100247276 1304.66
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1267 Blo04g00968 . . Bda10g00359 Bpe15g00398 . . . . . Cma03g01085 Cma07g00791 Car03g00975 Car07g00777 . . . Bhi03g01375 . . . Hepe04g1122 . . Cla01g01526 Cam01g1596 Cec04g1240 Cco04g1310 Clacu01g1620 Cmu01g1506 Cre04g1185 . . Cone6ag1293 . Lsi01g01138 . . Cme08g01072 . . . Bda14g01058 . Bpe06g00273 Bma03g01033 Bma06g00513 . Cmo03g01072 Cmo07g00814 . . . . . . . . . . . . . . . . . . . . . Csa06g02793 Chy02g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003346 3 4 4 4 4 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 1 3 1 1 49