Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1273 ATGGCTCCGGCTACCTCCTCCCCGGCAGCGGCTCAGAAGCTCTTCCCCTTCAAAGGCTCCGTCCGCCGCACCGAGGCGCCGCGGCGTCCGTCGCTGCCGGCCAGGAAGTACAAATCGATGGCGGAGATAATGGCGACGGCCAAGTACCTCGTGATCGAACGCGCCGATTACAGCGACGTCCGTTGCGTGCAATGCGGCTCCGGCGACCACGACGATGAGCTGCTTCTCTGCGACAAATGCGACCGTGGCTTCCACATGTCCTGTCTCCGGCCGATCGTCGTTCGCATTCCGATTGGGACGTGGCTCTGCCCTAGCTGTTCTGGCCAGAGACGAGGAAGAAGCCTTTCTCAGACTAAGATTATAGACTTTTTTGGTATTCAAAAGCGCAGTGATGGAATGGGGGAATTTGCTTCTACTCAAGATGGTAGAAAGCGTAGGAGAAAGTCTGCATCACTGGTGTTGCACAAAAAAAAAAGGAGACTAGTGTCATTTACTCCAACAGAAGATCATGCACAAAGACTAAAACAGATGGGTTCCCTTGCTTCTGCTTTAACAGCATTGCACATGGAATTCACTGATGAACTCACCTACATGCCGGGCATGGCTCCTAGATCTGCCAATCAAGCAAAGTTTGAAAATGGTGGCATGCAGGTTCTTTCCAAAGAAGACATAGAAACCTTGGAACACTGCAGGGCTATGTCTAAAAGAGGCGAAGGCCCACCACTTATAGTAGCTTTTGATTCATTTGAAGGTTATACCGTAGAGGCTGATGGCCTGATAAAGGATATGACATTTATTGCTGAATACACAGGCGATGTGGATTACATCAGGAATCGGGAACATGATGATTGTGACAGTATGATGACCCTTCTTTTAGCAACCGACCCATCTAAAAGTCTTGTCATCTGCCCTGATAAACGTGGAAACATTGCTCGCTTTATCAATGGCATTAACAATCATACTTTGGATGGTAAGAAGAAGCAGAATCTAAAATGTGTGAGATACAGTGTGAATGGTGAATGTCGGGTCCTTTTGGTTGCTACTCGTGATATTGCTAAGGGGGAGAGGCTATATTATGACTATAATGGTTATGAGCATGAATACCCAACCCATCATTTTGTCTAA 1125 48.0 MAPATSSPAAAQKLFPFKGSVRRTEAPRRPSLPARKYKSMAEIMATAKYLVIERADYSDVRCVQCGSGDHDDELLLCDKCDRGFHMSCLRPIVVRIPIGTWLCPSCSGQRRGRSLSQTKIIDFFGIQKRSDGMGEFASTQDGRKRRRKSASLVLHKKKRRLVSFTPTEDHAQRLKQMGSLASALTALHMEFTDELTYMPGMAPRSANQAKFENGGMQVLSKEDIETLEHCRAMSKRGEGPPLIVAFDSFEGYTVEADGLIKDMTFIAEYTGDVDYIRNREHDDCDSMMTLLLATDPSKSLVICPDKRGNIARFINGINNHTLDGKKKQNLKCVRYSVNGECRVLLVATRDIAKGERLYYDYNGYEHEYPTHHFV* 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22226308 22252207 + Vvi4g1273 Vvi4g1273 786052

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1273 374 ProSiteProfiles SET domain profile. 240 362 IPR001214 GO:0005515
Vvi4g1273 374 SUPERFAMILY FYVE/PHD zinc finger 34 107 IPR011011 -
Vvi4g1273 374 SMART set_7 240 368 IPR001214 GO:0005515
Vvi4g1273 374 CDD SET_ATXR5_6-like 237 374 - -
Vvi4g1273 374 SUPERFAMILY SET domain 233 362 IPR046341 -
Vvi4g1273 374 PANTHER HISTONE ACETYLTRANSFERASE 10 372 - -
Vvi4g1273 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 120 IPR013083 -
Vvi4g1273 374 SMART PHD_3 61 107 IPR001965 -
Vvi4g1273 374 Pfam SET domain 138 362 IPR001214 GO:0005515
Vvi4g1273 374 ProSitePatterns Zinc finger PHD-type signature. 62 106 IPR019786 -
Vvi4g1273 374 Gene3D SET domain 145 374 IPR046341 -
Vvi4g1273 374 ProSiteProfiles Zinc finger PHD-type profile. 59 109 IPR019787 -
Vvi4g1273 374 CDD PHD_RSF1 62 106 - -
Vvi4g1273 374 Pfam PHD-finger 61 107 IPR019787 -
Vvi4g1273 374 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 10 372 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1273 K24406 ATXR5_6; [histone H3]-lysine27 N-methyltransferase [EC:2.1.1.369] - vvi:100247284 764.222
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1273 Blo04g00967 . . . Bpe15g00400 . . . Cmo02g00627 Cmo20g01075 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01056 . . Bma03g01031 . . . . . Cma20g01067 . . Cpe05g01065 Cpe16g00078 Bhi10g01661 . . . . . . Cla02g00064 Cam02g0065 Cec02g0067 Cco02g0060 Clacu02g0064 Cmu02g0064 Cre02g0403 . . . Cme11g00068
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001827 2 3 2 2 2 2 5 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 1 1 2 2 4 1 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14719 PF00856 SET 8.30E-07 No_clan Vvi TR