Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1279 ATGGGGCTCCCTCATCACCAAGCACCGGAGAAAAATCCTATAAATACGGTAAATTTTAACTCTGTTCATCATCATTTCCATGGATTCTCTCTTCTGTCCCATTCTTCTTTCTCTTCTCTTTCTTTCCACTTCCTCCGCCGCATACCGAATCTCATCGACGGCGAAGGCTCTGCCACTTGGGAGGATCAAGGATGCGAGGGCCTGGATGAGCTCCGCCCTAGTCCACCAGTACAGTTGTTGGTCAGCCCTCAACCAAACGCGACGGTGTGTAAGGGAGGCGACGGGTGTTACAAGACGGTGCAGGAAGCGGTGAATGCGGCACCGGACAACGACAGTAGCCGGAAGTTTGTGATTAGGATCCAGGAAGGGGTCTACGAGGAAACGGTCAGGGTGCCGTTGGAGAAAAAGAACGTGGTGTTCCTGGGAGATGGTATGGGCAAAACGGTAATTACGGGCTCTTTGAATGTGGGCCAACCTGGAATTTCCACCTACAACTCTGCAACCGTCGGGGTTGCGGGCGATGGGTTCATGGCGAGTGGGCTCACAATGGAGAACACGGCCGGCCCTGATGAACACCAAGCCGTAGCTTTCAGATCAGACAGCGATTTATCGGTAATCGAAAACTGCGAATTCATAAGCAATCAAGACACCCTCTACGTTTACTCCCTTCGCCAGTTCTACAAGTCATGCCGCATCCAAGGCAACGTGGACTTCATCTTCGGCAACTCCGCTTCAATCTTCCACGACTGCCTCATCCTGGTCAGCCCCAGGCCACTCGATCCCGAGAAAGGCGAAACAAATGCTGTGACAGCCCATGGAAGAACGGACCCTGCTCAGACCACAGGCCTGGTTTTCCAAAACTGTGTGGTAAATGGCACCGAGGAGTACATGAAATTGTACCATAGCAACCCCACGGTACACAAGAACTTCTTGGGGCGGCCATGGAAGGAGTATTCCAGGACTGTTTTCATACATTGTAACTTGGAAGTTCTTATTACACCGCCAGGGTGGATGCCATGGAGTGGGGATTTTGCATTAGCGACACTTTATTATGGGGAATTTGAGAATAGGGGACTGGGTGCTAATTTATCTTCAAGAGTGGAATGGAGTAGCCGAATTCCGGCTAAGCATGTTGGCACGTATTCGTTGAAGAATTTCATTCAAGGTGATGAGTGGATTCCACATATTCTTGATGATGAGGCCACTGCAATTAATCACTGA 1221 50.37 MGLPHHQAPEKNPINTVNFNSVHHHFHGFSLLSHSSFSSLSFHFLRRIPNLIDGEGSATWEDQGCEGLDELRPSPPVQLLVSPQPNATVCKGGDGCYKTVQEAVNAAPDNDSSRKFVIRIQEGVYEETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNSATVGVAGDGFMASGLTMENTAGPDEHQAVAFRSDSDLSVIENCEFISNQDTLYVYSLRQFYKSCRIQGNVDFIFGNSASIFHDCLILVSPRPLDPEKGETNAVTAHGRTDPAQTTGLVFQNCVVNGTEEYMKLYHSNPTVHKNFLGRPWKEYSRTVFIHCNLEVLITPPGWMPWSGDFALATLYYGEFENRGLGANLSSRVEWSSRIPAKHVGTYSLKNFIQGDEWIPHILDDEATAINH* 407
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 22313151 22315063 - Vvi4g1279 Vvi4g1279 786058
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1279 406 Gene3D - 81 398 IPR012334 -
Vvi4g1279 406 Pfam Pectinesterase 86 390 IPR000070 GO:0030599|GO:0042545
Vvi4g1279 406 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 78 396 - -
Vvi4g1279 406 SUPERFAMILY Pectin lyase-like 83 397 IPR011050 -
Vvi4g1279 406 PANTHER PECTINESTERASE 78 396 - -
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1279 - - vvi:100259136 669.463